Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:58181706-58401711

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubqln1 13 58176156 to 58215653 39497 - protein coding gene ubiquilin 1
Tssr122815 13 58182222 to 58182246 24 - TSS region transcription start site region 122815
Tssr122816 13 58183235 to 58183258 23 - TSS region transcription start site region 122816
Tssr122817 13 58183312 to 58183326 14 - TSS region transcription start site region 122817
Gm48357 13 58184896 to 58191318 6422 - sense intronic lncRNA gene predicted gene, 48357
Tssr122818 13 58192140 to 58192145 5 - TSS region transcription start site region 122818
Cpgi5723 13 58214864 to 58216317 1453 CpG island CpG island 5723
Tssr120068 13 58214928 to 58214934 6 + TSS region transcription start site region 120068
Tssr122819 13 58215558 to 58215612 54 - TSS region transcription start site region 122819
Tssr122820 13 58215615 to 58215662 47 - TSS region transcription start site region 122820
Tssr120069 13 58215690 to 58215719 29 + TSS region transcription start site region 120069
Gm48432 13 58218719 to 58219276 557 + pseudogene predicted gene, 48432
Gm48441 13 58232143 to 58236750 4607 + antisense lncRNA gene predicted gene, 48441
Gkap1 13 58233346 to 58274839 41493 - protein coding gene G kinase anchoring protein 1
Tssr4087 13 58263229 to 58263243 14 + TSS region transcription start site region 4087
Tssr120070 13 58263940 to 58263969 29 + TSS region transcription start site region 120070
Tssr120071 13 58263976 to 58263989 13 + TSS region transcription start site region 120071
Tssr122821 13 58264731 to 58264736 5 - TSS region transcription start site region 122821
Tssr122822 13 58271921 to 58271925 4 - TSS region transcription start site region 122822
Cpgi5724 13 58273351 to 58275259 1908 CpG island CpG island 5724
Tssr122823 13 58274096 to 58274115 19 - TSS region transcription start site region 122823
Tssr122824 13 58274121 to 58274207 86 - TSS region transcription start site region 122824
Tssr120072 13 58274252 to 58274280 28 + TSS region transcription start site region 120072
Tssr122825 13 58274263 to 58274338 75 - TSS region transcription start site region 122825
Tssr122826 13 58274340 to 58274364 24 - TSS region transcription start site region 122826
Tssr122827 13 58274367 to 58274377 10 - TSS region transcription start site region 122827
Tssr122828 13 58274461 to 58274495 34 - TSS region transcription start site region 122828
Tssr122829 13 58274504 to 58274518 14 - TSS region transcription start site region 122829
Tssr122830 13 58274833 to 58274851 18 - TSS region transcription start site region 122830
Tssr122831 13 58275647 to 58275651 4 - TSS region transcription start site region 122831
Tssr122832 13 58275700 to 58275703 3 - TSS region transcription start site region 122832
Tssr120073 13 58281158 to 58281171 13 + TSS region transcription start site region 120073
Tssr4088 13 58281174 to 58281180 6 + TSS region transcription start site region 4088
Gm26555 13 58281183 to 58299145 17962 + antisense lncRNA gene predicted gene, 26555
Tssr120074 13 58281186 to 58281196 10 + TSS region transcription start site region 120074
Tssr120075 13 58281213 to 58281218 5 + TSS region transcription start site region 120075
Kif27 13 58287502 to 58359122 71620 - protein coding gene kinesin family member 27
Tssr122833 13 58291686 to 58291689 3 - TSS region transcription start site region 122833
Tssr122834 13 58291706 to 58291711 5 - TSS region transcription start site region 122834
Tssr122835 13 58291733 to 58291742 9 - TSS region transcription start site region 122835
Mir6369 13 58313044 to 58313149 105 - miRNA gene microRNA 6369
Gm24284 13 58325267 to 58325408 141 + snoRNA gene predicted gene, 24284
D13Mit279 13 58341228 to 58341344 116 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 279
Pas10 13 58341228 to 58341344 116 QTL pulmonary adenoma susceptibility 10
Cpgi5725 13 58358564 to 58359581 1017 CpG island CpG island 5725
Tssr122836 13 58358754 to 58358762 8 - TSS region transcription start site region 122836
Tssr122837 13 58358781 to 58358799 18 - TSS region transcription start site region 122837
Tssr122838 13 58358814 to 58358823 9 - TSS region transcription start site region 122838
Tssr122839 13 58359022 to 58359066 44 - TSS region transcription start site region 122839
Tssr122840 13 58359077 to 58359122 45 - TSS region transcription start site region 122840
Tssr120076 13 58364599 to 58364618 19 + TSS region transcription start site region 120076
Tssr122841 13 58365193 to 58365195 2 - TSS region transcription start site region 122841
2210016F16Rik 13 58380046 to 58385225 5179 - protein coding gene RIKEN cDNA 2210016F16 gene
Cpgi5726 13 58384519 to 58385699 1180 CpG island CpG island 5726
Tssr122842 13 58385162 to 58385169 7 - TSS region transcription start site region 122842
Tssr122843 13 58385176 to 58385188 12 - TSS region transcription start site region 122843
Tssr122844 13 58385190 to 58385242 52 - TSS region transcription start site region 122844
Hnrnpk 13 58391142 to 58403343 12201 - protein coding gene heterogeneous nuclear ribonucleoprotein K
Tssr122845 13 58391922 to 58391926 4 - TSS region transcription start site region 122845
Mir7-1 13 58392779 to 58392886 107 - miRNA gene microRNA 7-1
Tssr122846 13 58392795 to 58392799 4 - TSS region transcription start site region 122846
Tssr122847 13 58399145 to 58399186 41 - TSS region transcription start site region 122847
Tssr122848 13 58400488 to 58400492 4 - TSS region transcription start site region 122848
Cpgi5727 13 58400995 to 58403480 2485 CpG island CpG island 5727
Tssr122849 13 58401520 to 58401590 70 - TSS region transcription start site region 122849