Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:58111156-58280653

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klhl3 13 58000228 to 58113592 113364 - protein coding gene kelch-like 3
Gm33389 13 58071690 to 58113135 41445 + lncRNA gene predicted gene, 33389
Cpgi5719 13 58112873 to 58113818 945 CpG island CpG island 5719
Tssr122805 13 58113281 to 58113297 16 - TSS region transcription start site region 122805
Tssr122806 13 58113595 to 58113620 25 - TSS region transcription start site region 122806
Tssr122807 13 58113621 to 58113655 34 - TSS region transcription start site region 122807
Tssr122808 13 58123411 to 58123428 17 - TSS region transcription start site region 122808
Hnrnpa0 13 58125879 to 58128556 2677 - protein coding gene heterogeneous nuclear ribonucleoprotein A0
Tssr122809 13 58126779 to 58126792 13 - TSS region transcription start site region 122809
Tssr122810 13 58127043 to 58127065 22 - TSS region transcription start site region 122810
Tssr122811 13 58127104 to 58127116 12 - TSS region transcription start site region 122811
Cpgi5720 13 58127208 to 58129583 2375 CpG island CpG island 5720
Tssr122812 13 58127612 to 58127631 19 - TSS region transcription start site region 122812
Tssr122813 13 58127971 to 58127996 25 - TSS region transcription start site region 122813
Tssr122814 13 58128542 to 58128567 25 - TSS region transcription start site region 122814
Tssr120061 13 58128641 to 58128653 12 + TSS region transcription start site region 120061
Tssr120062 13 58128980 to 58129056 76 + TSS region transcription start site region 120062
Gm40964 13 58130752 to 58140093 9341 + lncRNA gene predicted gene, 40964
1700066J03Rik 13 58146949 to 58148975 2026 + lncRNA gene RIKEN cDNA 1700066J03 gene
Tssr120063 13 58148513 to 58148524 11 + TSS region transcription start site region 120063
Tssr120064 13 58148538 to 58148548 10 + TSS region transcription start site region 120064
Tssr120065 13 58148553 to 58148566 13 + TSS region transcription start site region 120065
Cpgi5721 13 58148592 to 58148772 180 CpG island CpG island 5721
Gm48295 13 58155141 to 58157575 2434 - bidirectional promoter lncRNA gene predicted gene, 48295
Cpgi5722 13 58157409 to 58157980 571 CpG island CpG island 5722
Tssr120066 13 58157627 to 58157634 7 + TSS region transcription start site region 120066
Tssr120067 13 58157642 to 58157689 47 + TSS region transcription start site region 120067
Idnk 13 58157649 to 58164693 7044 + protein coding gene idnK gluconokinase homolog (E. coli)
Ubqln1 13 58176156 to 58215653 39497 - protein coding gene ubiquilin 1
Tssr122815 13 58182222 to 58182246 24 - TSS region transcription start site region 122815
Tssr122816 13 58183235 to 58183258 23 - TSS region transcription start site region 122816
Tssr122817 13 58183312 to 58183326 14 - TSS region transcription start site region 122817
Gm48357 13 58184896 to 58191318 6422 - sense intronic lncRNA gene predicted gene, 48357
Tssr122818 13 58192140 to 58192145 5 - TSS region transcription start site region 122818
Cpgi5723 13 58214864 to 58216317 1453 CpG island CpG island 5723
Tssr120068 13 58214928 to 58214934 6 + TSS region transcription start site region 120068
Tssr122819 13 58215558 to 58215612 54 - TSS region transcription start site region 122819
Tssr122820 13 58215615 to 58215662 47 - TSS region transcription start site region 122820
Tssr120069 13 58215690 to 58215719 29 + TSS region transcription start site region 120069
Gm48432 13 58218719 to 58219276 557 + pseudogene predicted gene, 48432
Gm48441 13 58232143 to 58236750 4607 + antisense lncRNA gene predicted gene, 48441
Gkap1 13 58233346 to 58274839 41493 - protein coding gene G kinase anchoring protein 1
Tssr4087 13 58263229 to 58263243 14 + TSS region transcription start site region 4087
Tssr120070 13 58263940 to 58263969 29 + TSS region transcription start site region 120070
Tssr120071 13 58263976 to 58263989 13 + TSS region transcription start site region 120071
Tssr122821 13 58264731 to 58264736 5 - TSS region transcription start site region 122821
Tssr122822 13 58271921 to 58271925 4 - TSS region transcription start site region 122822
Cpgi5724 13 58273351 to 58275259 1908 CpG island CpG island 5724
Tssr122823 13 58274096 to 58274115 19 - TSS region transcription start site region 122823
Tssr122824 13 58274121 to 58274207 86 - TSS region transcription start site region 122824
Tssr120072 13 58274252 to 58274280 28 + TSS region transcription start site region 120072
Tssr122825 13 58274263 to 58274338 75 - TSS region transcription start site region 122825
Tssr122826 13 58274340 to 58274364 24 - TSS region transcription start site region 122826
Tssr122827 13 58274367 to 58274377 10 - TSS region transcription start site region 122827
Tssr122828 13 58274461 to 58274495 34 - TSS region transcription start site region 122828
Tssr122829 13 58274504 to 58274518 14 - TSS region transcription start site region 122829
Tssr122830 13 58274833 to 58274851 18 - TSS region transcription start site region 122830
Tssr122831 13 58275647 to 58275651 4 - TSS region transcription start site region 122831
Tssr122832 13 58275700 to 58275703 3 - TSS region transcription start site region 122832