Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:57830945-58210950

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spock1 13 57421195 to 57908332 487137 - protein coding gene sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
Tssr4086 13 57882266 to 57882271 5 - TSS region transcription start site region 4086
Tssr122799 13 57884377 to 57884391 14 - TSS region transcription start site region 122799
Cpgi5714 13 57907228 to 57908622 1394 CpG island CpG island 5714
Tssr122800 13 57908310 to 57908321 11 - TSS region transcription start site region 122800
Tssr122801 13 57908324 to 57908339 15 - TSS region transcription start site region 122801
D13Mit52 13 57908830 to 57908975 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 52
Cpgi5715 13 57995447 to 57995618 171 CpG island CpG island 5715
Klhl3 13 58000228 to 58113592 113364 - protein coding gene kelch-like 3
Tssr122802 13 58001848 to 58001853 5 - TSS region transcription start site region 122802
Tssr122803 13 58007862 to 58007869 7 - TSS region transcription start site region 122803
Tssr122804 13 58020945 to 58020950 5 - TSS region transcription start site region 122804
Mir874 13 58023125 to 58023200 75 - miRNA gene microRNA 874
Cpgi5716 13 58067844 to 58067997 153 CpG island CpG island 5716
Cpgi5717 13 58071248 to 58071691 443 CpG island CpG island 5717
Tssr120058 13 58071483 to 58071489 6 + TSS region transcription start site region 120058
Tssr120059 13 58071521 to 58071530 9 + TSS region transcription start site region 120059
Gm33389 13 58071690 to 58113135 41445 + lncRNA gene predicted gene, 33389
Tssr120060 13 58073259 to 58073294 35 + TSS region transcription start site region 120060
Cpgi5718 13 58095089 to 58095453 364 CpG island CpG island 5718
D530015H24Rik 13 58098287 to 58099339 1052 unclassified gene RIKEN cDNA D530015H24 gene
Cpgi5719 13 58112873 to 58113818 945 CpG island CpG island 5719
Tssr122805 13 58113281 to 58113297 16 - TSS region transcription start site region 122805
Tssr122806 13 58113595 to 58113620 25 - TSS region transcription start site region 122806
Tssr122807 13 58113621 to 58113655 34 - TSS region transcription start site region 122807
Tssr122808 13 58123411 to 58123428 17 - TSS region transcription start site region 122808
Hnrnpa0 13 58125879 to 58128556 2677 - protein coding gene heterogeneous nuclear ribonucleoprotein A0
Tssr122809 13 58126779 to 58126792 13 - TSS region transcription start site region 122809
Tssr122810 13 58127043 to 58127065 22 - TSS region transcription start site region 122810
Tssr122811 13 58127104 to 58127116 12 - TSS region transcription start site region 122811
Cpgi5720 13 58127208 to 58129583 2375 CpG island CpG island 5720
Tssr122812 13 58127612 to 58127631 19 - TSS region transcription start site region 122812
Tssr122813 13 58127971 to 58127996 25 - TSS region transcription start site region 122813
Tssr122814 13 58128542 to 58128567 25 - TSS region transcription start site region 122814
Tssr120061 13 58128641 to 58128653 12 + TSS region transcription start site region 120061
Tssr120062 13 58128980 to 58129056 76 + TSS region transcription start site region 120062
Gm40964 13 58130752 to 58140093 9341 + lncRNA gene predicted gene, 40964
1700066J03Rik 13 58146949 to 58148975 2026 + lncRNA gene RIKEN cDNA 1700066J03 gene
Tssr120063 13 58148513 to 58148524 11 + TSS region transcription start site region 120063
Tssr120064 13 58148538 to 58148548 10 + TSS region transcription start site region 120064
Tssr120065 13 58148553 to 58148566 13 + TSS region transcription start site region 120065
Cpgi5721 13 58148592 to 58148772 180 CpG island CpG island 5721
Gm48295 13 58155141 to 58157575 2434 - bidirectional promoter lncRNA gene predicted gene, 48295
Cpgi5722 13 58157409 to 58157980 571 CpG island CpG island 5722
Tssr120066 13 58157627 to 58157634 7 + TSS region transcription start site region 120066
Tssr120067 13 58157642 to 58157689 47 + TSS region transcription start site region 120067
Idnk 13 58157649 to 58164693 7044 + protein coding gene idnK gluconokinase homolog (E. coli)
Ubqln1 13 58176156 to 58215653 39497 - protein coding gene ubiquilin 1
Tssr122815 13 58182222 to 58182246 24 - TSS region transcription start site region 122815
Tssr122816 13 58183235 to 58183258 23 - TSS region transcription start site region 122816
Tssr122817 13 58183312 to 58183326 14 - TSS region transcription start site region 122817
Gm48357 13 58184896 to 58191318 6422 - sense intronic lncRNA gene predicted gene, 48357
Tssr122818 13 58192140 to 58192145 5 - TSS region transcription start site region 122818