Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:57170802-58220806

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48174 13 57239847 to 57240255 408 + pseudogene predicted gene, 48174
Gm33197 13 57242452 to 57246455 4003 - lncRNA gene predicted gene, 33197
Gm48176 13 57276678 to 57277128 450 + pseudogene predicted gene, 48176
Cpgi5712 13 57282223 to 57282403 180 CpG island CpG island 5712
Tssr120057 13 57282345 to 57282365 20 + TSS region transcription start site region 120057
1700072F12Rik 13 57282363 to 57283266 903 + lncRNA gene RIKEN cDNA 1700072F12 gene
Gm33294 13 57294128 to 57440352 146224 + lncRNA gene predicted gene, 33294
Tssr4085 13 57332010 to 57332011 1 + TSS region transcription start site region 4085
Cpgi5713 13 57338108 to 57338391 283 CpG island CpG island 5713
Spock1 13 57421195 to 57908332 487137 - protein coding gene sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
Tssr122795 13 57426363 to 57426367 4 - TSS region transcription start site region 122795
Gm33240 13 57445000 to 57450938 5938 + lncRNA gene predicted gene, 33240
Tssr122796 13 57455160 to 57455164 4 - TSS region transcription start site region 122796
D13Mit65 13 57575805 to 57575941 136 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 65
2900064B16Rik 13 57644149 to 57645379 1230 unclassified gene RIKEN cDNA 2900064B16 gene
Tssr122797 13 57695802 to 57695806 4 - TSS region transcription start site region 122797
Dp(13Spock1)1Tac 13 57726474 to 57796000 69526 cytogenetic marker duplication, Chr 13, Taconic 1
Tssr122798 13 57798728 to 57798734 6 - TSS region transcription start site region 122798
Tssr4086 13 57882266 to 57882271 5 - TSS region transcription start site region 4086
Tssr122799 13 57884377 to 57884391 14 - TSS region transcription start site region 122799
Cpgi5714 13 57907228 to 57908622 1394 CpG island CpG island 5714
Tssr122800 13 57908310 to 57908321 11 - TSS region transcription start site region 122800
Tssr122801 13 57908324 to 57908339 15 - TSS region transcription start site region 122801
D13Mit52 13 57908830 to 57908975 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 52
Cpgi5715 13 57995447 to 57995618 171 CpG island CpG island 5715
Klhl3 13 58000228 to 58113592 113364 - protein coding gene kelch-like 3
Tssr122802 13 58001848 to 58001853 5 - TSS region transcription start site region 122802
Tssr122803 13 58007862 to 58007869 7 - TSS region transcription start site region 122803
Tssr122804 13 58020945 to 58020950 5 - TSS region transcription start site region 122804
Mir874 13 58023125 to 58023200 75 - miRNA gene microRNA 874
Cpgi5716 13 58067844 to 58067997 153 CpG island CpG island 5716
Cpgi5717 13 58071248 to 58071691 443 CpG island CpG island 5717
Tssr120058 13 58071483 to 58071489 6 + TSS region transcription start site region 120058
Tssr120059 13 58071521 to 58071530 9 + TSS region transcription start site region 120059
Gm33389 13 58071690 to 58113135 41445 + lncRNA gene predicted gene, 33389
Tssr120060 13 58073259 to 58073294 35 + TSS region transcription start site region 120060
Cpgi5718 13 58095089 to 58095453 364 CpG island CpG island 5718
D530015H24Rik 13 58098287 to 58099339 1052 unclassified gene RIKEN cDNA D530015H24 gene
Cpgi5719 13 58112873 to 58113818 945 CpG island CpG island 5719
Tssr122805 13 58113281 to 58113297 16 - TSS region transcription start site region 122805
Tssr122806 13 58113595 to 58113620 25 - TSS region transcription start site region 122806
Tssr122807 13 58113621 to 58113655 34 - TSS region transcription start site region 122807
Tssr122808 13 58123411 to 58123428 17 - TSS region transcription start site region 122808
Hnrnpa0 13 58125879 to 58128556 2677 - protein coding gene heterogeneous nuclear ribonucleoprotein A0
Tssr122809 13 58126779 to 58126792 13 - TSS region transcription start site region 122809
Tssr122810 13 58127043 to 58127065 22 - TSS region transcription start site region 122810
Tssr122811 13 58127104 to 58127116 12 - TSS region transcription start site region 122811
Cpgi5720 13 58127208 to 58129583 2375 CpG island CpG island 5720
Tssr122812 13 58127612 to 58127631 19 - TSS region transcription start site region 122812
Tssr122813 13 58127971 to 58127996 25 - TSS region transcription start site region 122813
Tssr122814 13 58128542 to 58128567 25 - TSS region transcription start site region 122814
Tssr120061 13 58128641 to 58128653 12 + TSS region transcription start site region 120061
Tssr120062 13 58128980 to 58129056 76 + TSS region transcription start site region 120062
Gm40964 13 58130752 to 58140093 9341 + lncRNA gene predicted gene, 40964
1700066J03Rik 13 58146949 to 58148975 2026 + lncRNA gene RIKEN cDNA 1700066J03 gene
Tssr120063 13 58148513 to 58148524 11 + TSS region transcription start site region 120063
Tssr120064 13 58148538 to 58148548 10 + TSS region transcription start site region 120064
Tssr120065 13 58148553 to 58148566 13 + TSS region transcription start site region 120065
Cpgi5721 13 58148592 to 58148772 180 CpG island CpG island 5721
Gm48295 13 58155141 to 58157575 2434 - bidirectional promoter lncRNA gene predicted gene, 48295
Cpgi5722 13 58157409 to 58157980 571 CpG island CpG island 5722
Tssr120066 13 58157627 to 58157634 7 + TSS region transcription start site region 120066
Tssr120067 13 58157642 to 58157689 47 + TSS region transcription start site region 120067
Idnk 13 58157649 to 58164693 7044 + protein coding gene idnK gluconokinase homolog (E. coli)
Ubqln1 13 58176156 to 58215653 39497 - protein coding gene ubiquilin 1
Tssr122815 13 58182222 to 58182246 24 - TSS region transcription start site region 122815
Tssr122816 13 58183235 to 58183258 23 - TSS region transcription start site region 122816
Tssr122817 13 58183312 to 58183326 14 - TSS region transcription start site region 122817
Gm48357 13 58184896 to 58191318 6422 - sense intronic lncRNA gene predicted gene, 48357
Tssr122818 13 58192140 to 58192145 5 - TSS region transcription start site region 122818
Cpgi5723 13 58214864 to 58216317 1453 CpG island CpG island 5723
Tssr120068 13 58214928 to 58214934 6 + TSS region transcription start site region 120068
Tssr122819 13 58215558 to 58215612 54 - TSS region transcription start site region 122819
Tssr122820 13 58215615 to 58215662 47 - TSS region transcription start site region 122820
Tssr120069 13 58215690 to 58215719 29 + TSS region transcription start site region 120069
Gm48432 13 58218719 to 58219276 557 + pseudogene predicted gene, 48432