Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:5702565-7622894

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35330 13 5690821 to 5724611 33790 - lincRNA gene predicted gene, 35330
Tssr121308 13 5724439 to 5724458 19 - TSS region transcription start site region 121308
Tssr118231 13 5786067 to 5786068 1 + TSS region transcription start site region 118231
Tssr118232 13 5789609 to 5789612 3 + TSS region transcription start site region 118232
Gm35413 13 5802782 to 5803161 379 - lncRNA gene predicted gene, 35413
Cpgi5252 13 5802900 to 5803061 161 CpG island CpG island 5252
Tssr118233 13 5803829 to 5803847 18 + TSS region transcription start site region 118233
Tssr118234 13 5804544 to 5804550 6 + TSS region transcription start site region 118234
Tssr121309 13 5804636 to 5804648 12 - TSS region transcription start site region 121309
Gm26043 13 5821768 to 5821858 90 - miRNA gene predicted gene, 26043
Tssr121310 13 5822716 to 5822721 5 - TSS region transcription start site region 121310
Gm35464 13 5830121 to 5834477 4356 + lncRNA gene predicted gene, 35464
Tssr118235 13 5841719 to 5841720 1 + TSS region transcription start site region 118235
Tssr118236 13 5845316 to 5845334 18 + TSS region transcription start site region 118236
Tssr121311 13 5845725 to 5845738 13 - TSS region transcription start site region 121311
Tssr121312 13 5845770 to 5845782 12 - TSS region transcription start site region 121312
Tssr121313 13 5845787 to 5845818 31 - TSS region transcription start site region 121313
1700016G22Rik 13 5855509 to 5858092 2583 - lincRNA gene RIKEN cDNA 1700016G22 gene
Tssr121314 13 5857518 to 5857561 43 - TSS region transcription start site region 121314
B230207M22Rik 13 5860325 to 5861196 871 unclassified gene RIKEN cDNA B230207M22 gene
Cpgi5253 13 5860742 to 5861936 1194 CpG island CpG island 5253
Tssr121315 13 5860798 to 5860816 18 - TSS region transcription start site region 121315
Tssr121316 13 5861156 to 5861173 17 - TSS region transcription start site region 121316
Tssr121317 13 5861188 to 5861204 16 - TSS region transcription start site region 121317
Tssr121318 13 5861263 to 5861281 18 - TSS region transcription start site region 121318
Klf6 13 5861489 to 5870393 8904 + protein coding gene Kruppel-like factor 6
Tssr118237 13 5861494 to 5861501 7 + TSS region transcription start site region 118237
Tssr118238 13 5861503 to 5861526 23 + TSS region transcription start site region 118238
Tssr118239 13 5861530 to 5861550 20 + TSS region transcription start site region 118239
Tssr118240 13 5861553 to 5861564 11 + TSS region transcription start site region 118240
Tssr118241 13 5861626 to 5861637 11 + TSS region transcription start site region 118241
Tssr118242 13 5861662 to 5861673 11 + TSS region transcription start site region 118242
Tssr118243 13 5861862 to 5861875 13 + TSS region transcription start site region 118243
Tssr118244 13 5862599 to 5862621 22 + TSS region transcription start site region 118244
Tssr118245 13 5862857 to 5862872 15 + TSS region transcription start site region 118245
Tssr118246 13 5863815 to 5863826 11 + TSS region transcription start site region 118246
Tssr118247 13 5863881 to 5863896 15 + TSS region transcription start site region 118247
Tssr121319 13 5864305 to 5864314 9 - TSS region transcription start site region 121319
Tssr121320 13 5864329 to 5864351 22 - TSS region transcription start site region 121320
Tssr121321 13 5864352 to 5864362 10 - TSS region transcription start site region 121321
Tssr121322 13 5864373 to 5864403 30 - TSS region transcription start site region 121322
Tssr118248 13 5864486 to 5864497 11 + TSS region transcription start site region 118248
Tssr118249 13 5864691 to 5864702 11 + TSS region transcription start site region 118249
Tssr118250 13 5864750 to 5864768 18 + TSS region transcription start site region 118250
Tssr118251 13 5864770 to 5864803 33 + TSS region transcription start site region 118251
Tssr118252 13 5864850 to 5864861 11 + TSS region transcription start site region 118252
Tssr118253 13 5866410 to 5866427 17 + TSS region transcription start site region 118253
Tssr118254 13 5866437 to 5866458 21 + TSS region transcription start site region 118254
Tssr118255 13 5867567 to 5867604 37 + TSS region transcription start site region 118255
Tssr118256 13 5867613 to 5867642 29 + TSS region transcription start site region 118256
Tssr118257 13 5867695 to 5867730 35 + TSS region transcription start site region 118257
Tssr118258 13 5867737 to 5867757 20 + TSS region transcription start site region 118258
Tssr121323 13 5867844 to 5867851 7 - TSS region transcription start site region 121323
Tssr118259 13 5867886 to 5867898 12 + TSS region transcription start site region 118259
Tssr118260 13 5867915 to 5867931 16 + TSS region transcription start site region 118260
Tssr118261 13 5868083 to 5868094 11 + TSS region transcription start site region 118261
Tssr118262 13 5868381 to 5868394 13 + TSS region transcription start site region 118262
Tssr118263 13 5868398 to 5868409 11 + TSS region transcription start site region 118263
Tssr118264 13 5868439 to 5868464 25 + TSS region transcription start site region 118264
Tssr118265 13 5868478 to 5868497 19 + TSS region transcription start site region 118265
Tssr118266 13 5868511 to 5868523 12 + TSS region transcription start site region 118266
Tssr118267 13 5868562 to 5868573 11 + TSS region transcription start site region 118267
Tssr118268 13 5868588 to 5868621 33 + TSS region transcription start site region 118268
Tssr118269 13 5868638 to 5868656 18 + TSS region transcription start site region 118269
Tssr118270 13 5868749 to 5868761 12 + TSS region transcription start site region 118270
Tssr118271 13 5868815 to 5868827 12 + TSS region transcription start site region 118271
Tssr118272 13 5868872 to 5868898 26 + TSS region transcription start site region 118272
Tssr118273 13 5868948 to 5868966 18 + TSS region transcription start site region 118273
Tssr118274 13 5869018 to 5869089 71 + TSS region transcription start site region 118274
Tssr118275 13 5869118 to 5869129 11 + TSS region transcription start site region 118275
Tssr118276 13 5869456 to 5869477 21 + TSS region transcription start site region 118276
Tssr118277 13 5869502 to 5869532 30 + TSS region transcription start site region 118277
Tssr118278 13 5869639 to 5869718 79 + TSS region transcription start site region 118278
Tssr118279 13 5871600 to 5871609 9 + TSS region transcription start site region 118279
Tssr118280 13 5887085 to 5887121 36 + TSS region transcription start site region 118280
Gm47507 13 5887109 to 5928045 40936 + lincRNA gene predicted gene, 47507
Gm46401 13 5915706 to 6013963 98257 + lincRNA gene predicted gene, 46401
Gm26259 13 5997455 to 5997551 96 - miRNA gene predicted gene, 26259
Tssr118281 13 6009616 to 6009621 5 + TSS region transcription start site region 118281
Gm47514 13 6024533 to 6029004 4471 - lincRNA gene predicted gene, 47514
Gm47548 13 6073113 to 6073782 669 - lincRNA gene predicted gene, 47548
Tssr3985 13 6073865 to 6073867 2 + TSS region transcription start site region 3985
D13Mit205 13 6077760 to 6077881 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 205
Tssr121324 13 6109068 to 6109078 10 - TSS region transcription start site region 121324
Tssr121325 13 6109097 to 6109108 11 - TSS region transcription start site region 121325
Tssr3986 13 6123861 to 6123866 5 + TSS region transcription start site region 3986
Gm47549 13 6269108 to 6277026 7918 + lincRNA gene predicted gene, 47549
Gm35615 13 6280548 to 6289420 8872 - lincRNA gene predicted gene, 35615
D13Mit152 13 6302343 to 6302491 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 152
Gm35671 13 6307568 to 6320059 12491 + lncRNA gene predicted gene, 35671
Gm28465 13 6395716 to 6398740 3024 + lincRNA gene predicted gene 28465
Adip7 13 6404489 to 6404636 147 QTL adiposity 7
D13Mit1 13 6404489 to 6404636 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1
Tshp13 13 6404489 to 6404636 147 QTL tooth shape 13
Skull19 13 6404489 to 6404636 147 QTL skull morphology 19
D13Mit1.2 13 6404614 to 6404849 235 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1.2
Tssr121326 13 6404713 to 6404732 19 - TSS region transcription start site region 121326
2900042G08Rik 13 6530595 to 6531244 649 + unclassified gene RIKEN cDNA 2900042G08 gene
D13Mit302 13 6531826 to 6531947 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 302
Cpgi5254 13 6547900 to 6548370 470 CpG island CpG island 5254
Pitrm1 13 6548122 to 6580158 32036 + protein coding gene pitrilysin metallepetidase 1
Tssr118282 13 6548135 to 6548146 11 + TSS region transcription start site region 118282
Tssr118283 13 6548154 to 6548174 20 + TSS region transcription start site region 118283
Tssr118284 13 6548176 to 6548190 14 + TSS region transcription start site region 118284
Tssr118285 13 6555394 to 6555434 40 + TSS region transcription start site region 118285
Tssr118286 13 6558468 to 6558474 6 + TSS region transcription start site region 118286
Tssr118287 13 6559387 to 6559427 40 + TSS region transcription start site region 118287
Tssr118288 13 6563469 to 6563478 9 + TSS region transcription start site region 118288
Pfkp 13 6579874 to 6648792 68918 - protein coding gene phosphofructokinase, platelet
Tssr121327 13 6595903 to 6595907 4 - TSS region transcription start site region 121327
Tssr121328 13 6598378 to 6598382 4 - TSS region transcription start site region 121328
Tssr121329 13 6604379 to 6604395 16 - TSS region transcription start site region 121329
Tssr118289 13 6604979 to 6605008 29 + TSS region transcription start site region 118289
Tssr121330 13 6605028 to 6605063 35 - TSS region transcription start site region 121330
Cpgi5255 13 6621885 to 6622159 274 CpG island CpG island 5255
Gm35730 13 6631534 to 6648563 17029 + lncRNA gene predicted gene, 35730
Tssr121331 13 6636653 to 6636686 33 - TSS region transcription start site region 121331
Tssr121332 13 6640662 to 6640679 17 - TSS region transcription start site region 121332
Tssr121333 13 6640789 to 6640809 20 - TSS region transcription start site region 121333
Cpgi5256 13 6647082 to 6647460 378 CpG island CpG island 5256
Cpgi5257 13 6648444 to 6649123 679 CpG island CpG island 5257
Tssr121334 13 6648696 to 6648703 7 - TSS region transcription start site region 121334
Tssr121335 13 6648717 to 6648772 55 - TSS region transcription start site region 121335
Tssr121336 13 6648781 to 6648789 8 - TSS region transcription start site region 121336
Gm10029 13 6662565 to 6662894 329 - pseudogene predicted gene 10029
Gm48238 13 6673139 to 6673408 269 + pseudogene predicted gene, 48238
Tssr118290 13 6888752 to 6888760 8 + TSS region transcription start site region 118290
2900024D18Rik 13 6925283 to 6925851 568 - unclassified gene RIKEN cDNA 2900024D18 gene
D13Mit301 13 6969203 to 6969344 141 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 301
Gm40662 13 6995654 to 7076197 80543 - lincRNA gene predicted gene, 40662
Gm22689 13 7120394 to 7120503 109 - miRNA gene predicted gene, 22689
Gm35925 13 7137850 to 7161134 23284 - lncRNA gene predicted gene, 35925
Gm40663 13 7161176 to 7175750 14574 - lincRNA gene predicted gene, 40663
Tssr121337 13 7175666 to 7175671 5 - TSS region transcription start site region 121337
Gm8725 13 7307802 to 7309134 1332 + pseudogene predicted gene 8725
Gm6437 13 7387147 to 7388238 1091 + pseudogene predicted gene 6437
Gm36074 13 7446509 to 7465343 18834 + lincRNA gene predicted gene, 36074
Tssr118291 13 7446519 to 7446539 20 + TSS region transcription start site region 118291
D13Mit300 13 7469636 to 7469736 100 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 300
Gm36136 13 7507318 to 7510231 2913 + lncRNA gene predicted gene, 36136