Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:56483010-56962377

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr122785 13 56488101 to 56488131 30 - TSS region transcription start site region 122785
Tssr120019 13 56502088 to 56502101 13 + TSS region transcription start site region 120019
Tssr122786 13 56503793 to 56503796 3 - TSS region transcription start site region 122786
Tssr120020 13 56505888 to 56505919 31 + TSS region transcription start site region 120020
Cpgi5703 13 56522141 to 56522843 702 CpG island CpG island 5703
Tssr120021 13 56522449 to 56522495 46 + TSS region transcription start site region 120021
Fbxl21 13 56522472 to 56537898 15426 + protein coding gene F-box and leucine-rich repeat protein 21
Tssr120022 13 56522497 to 56522516 19 + TSS region transcription start site region 120022
Tssr120023 13 56522520 to 56522540 20 + TSS region transcription start site region 120023
Gm38602 13 56526112 to 56527002 890 - lncRNA gene predicted gene, 38602
Lect2 13 56542464 to 56548502 6038 - protein coding gene leukocyte cell-derived chemotaxin 2
D13Bc1 13 56544585 to 56544686 101 DNA segment DNA segment, Chr 13, University of British Columbia 1
Tssr122787 13 56548418 to 56548468 50 - TSS region transcription start site region 122787
Tssr122788 13 56548474 to 56548487 13 - TSS region transcription start site region 122788
Tssr122789 13 56548502 to 56548518 16 - TSS region transcription start site region 122789
Tssr122790 13 56548534 to 56548547 13 - TSS region transcription start site region 122790
Gm32759 13 56585690 to 56591754 6064 + lncRNA gene predicted gene, 32759
2010203P06Rik 13 56595537 to 56596642 1105 + lincRNA gene RIKEN cDNA 2010203P06 gene
Tssr120024 13 56596324 to 56596355 31 + TSS region transcription start site region 120024
Gm10781 13 56601418 to 56602562 1144 protein coding gene predicted gene 10781
Tssr120025 13 56609233 to 56609257 24 + TSS region transcription start site region 120025
Tssr120026 13 56609281 to 56609300 19 + TSS region transcription start site region 120026
Cpgi5704 13 56609288 to 56609938 650 CpG island CpG island 5704
Tssr120027 13 56609332 to 56609358 26 + TSS region transcription start site region 120027
Tssr120028 13 56609488 to 56609489 1 + TSS region transcription start site region 120028
Tssr120029 13 56609513 to 56609515 2 + TSS region transcription start site region 120029
Tssr120030 13 56609516 to 56609606 90 + TSS region transcription start site region 120030
Tgfbi 13 56609603 to 56639339 29736 + protein coding gene transforming growth factor, beta induced
Tssr120031 13 56609608 to 56609628 20 + TSS region transcription start site region 120031
Tssr120032 13 56609646 to 56609648 2 + TSS region transcription start site region 120032
Tssr120033 13 56613825 to 56613844 19 + TSS region transcription start site region 120033
Tssr120034 13 56614254 to 56614274 20 + TSS region transcription start site region 120034
D13Mit251 13 56614737 to 56614855 118 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 251
Tssr120035 13 56623548 to 56623580 32 + TSS region transcription start site region 120035
Tssr120036 13 56625224 to 56625260 36 + TSS region transcription start site region 120036
Tssr120037 13 56625642 to 56625666 24 + TSS region transcription start site region 120037
Tssr120038 13 56625722 to 56625763 41 + TSS region transcription start site region 120038
Tssr122791 13 56626166 to 56626181 15 - TSS region transcription start site region 122791
Tssr120039 13 56627931 to 56627967 36 + TSS region transcription start site region 120039
Tssr120040 13 56629722 to 56629735 13 + TSS region transcription start site region 120040
Tssr120041 13 56630564 to 56630591 27 + TSS region transcription start site region 120041
Tssr4084 13 56630878 to 56630898 20 + TSS region transcription start site region 4084
Tssr120042 13 56632911 to 56632926 15 + TSS region transcription start site region 120042
Tssr120043 13 56633248 to 56633256 8 + TSS region transcription start site region 120043
Tssr120044 13 56639666 to 56639680 14 + TSS region transcription start site region 120044
Gm40961 13 56663677 to 56665463 1786 - lncRNA gene predicted gene, 40961
Gm32965 13 56671045 to 56678624 7579 - lncRNA gene predicted gene, 32965
Gm32910 13 56678032 to 56679772 1740 + lncRNA gene predicted gene, 32910
Cpgi5705 13 56682382 to 56682835 453 CpG island CpG island 5705
Gm33019 13 56682604 to 56690296 7692 + lncRNA gene predicted gene, 33019
Gm27698 13 56699930 to 56700178 248 + unclassified non-coding RNA gene predicted gene, 27698
Tssr120045 13 56702426 to 56702435 9 + TSS region transcription start site region 120045
Cpgi5706 13 56702491 to 56704005 1514 CpG island CpG island 5706
Tssr120046 13 56702983 to 56703112 129 + TSS region transcription start site region 120046
Smad5 13 56703010 to 56742377 39367 + protein coding gene SMAD family member 5
Tssr120047 13 56703360 to 56703431 71 + TSS region transcription start site region 120047
Tssr120048 13 56703437 to 56703445 8 + TSS region transcription start site region 120048
Tssr120049 13 56703449 to 56703460 11 + TSS region transcription start site region 120049
Tssr120050 13 56703504 to 56703537 33 + TSS region transcription start site region 120050
Gm27301 13 56703641 to 56703767 126 + unclassified non-coding RNA gene predicted gene, 27301
Gm27834 13 56703881 to 56704005 124 + unclassified non-coding RNA gene predicted gene, 27834
Tssr122792 13 56703943 to 56703954 11 - TSS region transcription start site region 122792
Gm27271 13 56704030 to 56704199 169 + unclassified non-coding RNA gene predicted gene, 27271
Tssr120051 13 56706554 to 56706559 5 + TSS region transcription start site region 120051
Tssr120052 13 56728905 to 56728909 4 + TSS region transcription start site region 120052
D13Mit208 13 56732406 to 56732550 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 208
Tssr120053 13 56747784 to 56747801 17 + TSS region transcription start site region 120053
Tssr120054 13 56747967 to 56747979 12 + TSS region transcription start site region 120054
Gm45623 13 56752371 to 56753827 1456 - protein coding gene predicted gene 45623
Cpgi5707 13 56752399 to 56754152 1753 CpG island CpG island 5707
Tssr122793 13 56753814 to 56753854 40 - TSS region transcription start site region 122793
Trpc7 13 56773113 to 56895993 122880 - protein coding gene transient receptor potential cation channel, subfamily C, member 7
Cpgi5708 13 56806846 to 56807177 331 CpG island CpG island 5708
Cpgi5709 13 56810284 to 56810589 305 CpG island CpG island 5709
Tssr120055 13 56810420 to 56810459 39 + TSS region transcription start site region 120055
D13Mit185 13 56829432 to 56829580 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 185
Cpgi5710 13 56887285 to 56887935 650 CpG island CpG island 5710
Cpgi5711 13 56895429 to 56895697 268 CpG island CpG island 5711
Tssr122794 13 56895774 to 56895793 19 - TSS region transcription start site region 122794
Gm22777 13 56930820 to 56930948 128 - snoRNA gene predicted gene, 22777