Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:56353502-56743518

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40960 13 56346559 to 56357181 10622 - lncRNA gene predicted gene, 40960
Tssr122780 13 56357189 to 56357205 16 - TSS region transcription start site region 122780
Gm10782 13 56362900 to 56368857 5957 + lincRNA gene predicted gene 10782
Tssr120011 13 56372631 to 56372636 5 + TSS region transcription start site region 120011
Gm46418 13 56382708 to 56423812 41104 + lncRNA gene predicted gene, 46418
Tssr122781 13 56426501 to 56426508 7 - TSS region transcription start site region 122781
Tssr120012 13 56426582 to 56426593 11 + TSS region transcription start site region 120012
Gm3045 13 56426594 to 56433753 7159 + protein coding gene predicted gene 3045
Tssr120013 13 56426612 to 56426624 12 + TSS region transcription start site region 120013
Slc25a48 13 56437964 to 56472367 34403 + protein coding gene solute carrier family 25, member 48
Cpgi5702 13 56438269 to 56438779 510 CpG island CpG island 5702
Tssr120014 13 56438302 to 56438324 22 + TSS region transcription start site region 120014
Tssr120015 13 56438343 to 56438369 26 + TSS region transcription start site region 120015
Tssr120016 13 56438381 to 56438393 12 + TSS region transcription start site region 120016
Tssr120017 13 56438915 to 56438917 2 + TSS region transcription start site region 120017
Tssr120018 13 56441471 to 56441475 4 + TSS region transcription start site region 120018
Tssr122782 13 56472420 to 56472426 6 - TSS region transcription start site region 122782
Il9 13 56479277 to 56482246 2969 - protein coding gene interleukin 9
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
Bmd13 13 56481436 to 56481584 148 QTL bone mineral density 13
Bwem2 13 56481436 to 56481584 148 QTL body weight day 30 males 2
Cia28 13 56481436 to 96102654 39621218 QTL collagen induced arthritis QTL 28
Cpfd5 13 56481436 to 56481584 148 QTL cerebellum pattern fissures, declival 5
D13Mit13 13 56481436 to 56481584 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 13
Tssr122783 13 56482153 to 56482197 44 - TSS region transcription start site region 122783
Tssr122784 13 56482255 to 56482258 3 - TSS region transcription start site region 122784
Tssr122785 13 56488101 to 56488131 30 - TSS region transcription start site region 122785
Tssr120019 13 56502088 to 56502101 13 + TSS region transcription start site region 120019
Tssr122786 13 56503793 to 56503796 3 - TSS region transcription start site region 122786
Tssr120020 13 56505888 to 56505919 31 + TSS region transcription start site region 120020
Cpgi5703 13 56522141 to 56522843 702 CpG island CpG island 5703
Tssr120021 13 56522449 to 56522495 46 + TSS region transcription start site region 120021
Fbxl21 13 56522472 to 56537898 15426 + protein coding gene F-box and leucine-rich repeat protein 21
Tssr120022 13 56522497 to 56522516 19 + TSS region transcription start site region 120022
Tssr120023 13 56522520 to 56522540 20 + TSS region transcription start site region 120023
Gm38602 13 56526112 to 56527002 890 - lncRNA gene predicted gene, 38602
Lect2 13 56542464 to 56548502 6038 - protein coding gene leukocyte cell-derived chemotaxin 2
D13Bc1 13 56544585 to 56544686 101 DNA segment DNA segment, Chr 13, University of British Columbia 1
Tssr122787 13 56548418 to 56548468 50 - TSS region transcription start site region 122787
Tssr122788 13 56548474 to 56548487 13 - TSS region transcription start site region 122788
Tssr122789 13 56548502 to 56548518 16 - TSS region transcription start site region 122789
Tssr122790 13 56548534 to 56548547 13 - TSS region transcription start site region 122790
Gm32759 13 56585690 to 56591754 6064 + lncRNA gene predicted gene, 32759
2010203P06Rik 13 56595537 to 56596642 1105 + lincRNA gene RIKEN cDNA 2010203P06 gene
Tssr120024 13 56596324 to 56596355 31 + TSS region transcription start site region 120024
Gm10781 13 56601418 to 56602562 1144 protein coding gene predicted gene 10781
Tssr120025 13 56609233 to 56609257 24 + TSS region transcription start site region 120025
Tssr120026 13 56609281 to 56609300 19 + TSS region transcription start site region 120026
Cpgi5704 13 56609288 to 56609938 650 CpG island CpG island 5704
Tssr120027 13 56609332 to 56609358 26 + TSS region transcription start site region 120027
Tssr120028 13 56609488 to 56609489 1 + TSS region transcription start site region 120028
Tssr120029 13 56609513 to 56609515 2 + TSS region transcription start site region 120029
Tssr120030 13 56609516 to 56609606 90 + TSS region transcription start site region 120030
Tgfbi 13 56609603 to 56639339 29736 + protein coding gene transforming growth factor, beta induced
Tssr120031 13 56609608 to 56609628 20 + TSS region transcription start site region 120031
Tssr120032 13 56609646 to 56609648 2 + TSS region transcription start site region 120032
Tssr120033 13 56613825 to 56613844 19 + TSS region transcription start site region 120033
Tssr120034 13 56614254 to 56614274 20 + TSS region transcription start site region 120034
D13Mit251 13 56614737 to 56614855 118 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 251
Tssr120035 13 56623548 to 56623580 32 + TSS region transcription start site region 120035
Tssr120036 13 56625224 to 56625260 36 + TSS region transcription start site region 120036
Tssr120037 13 56625642 to 56625666 24 + TSS region transcription start site region 120037
Tssr120038 13 56625722 to 56625763 41 + TSS region transcription start site region 120038
Tssr122791 13 56626166 to 56626181 15 - TSS region transcription start site region 122791
Tssr120039 13 56627931 to 56627967 36 + TSS region transcription start site region 120039
Tssr120040 13 56629722 to 56629735 13 + TSS region transcription start site region 120040
Tssr120041 13 56630564 to 56630591 27 + TSS region transcription start site region 120041
Tssr4084 13 56630878 to 56630898 20 + TSS region transcription start site region 4084
Tssr120042 13 56632911 to 56632926 15 + TSS region transcription start site region 120042
Tssr120043 13 56633248 to 56633256 8 + TSS region transcription start site region 120043
Tssr120044 13 56639666 to 56639680 14 + TSS region transcription start site region 120044
Gm40961 13 56663677 to 56665463 1786 - lncRNA gene predicted gene, 40961
Gm32965 13 56671045 to 56678624 7579 - lncRNA gene predicted gene, 32965
Gm32910 13 56678032 to 56679772 1740 + lncRNA gene predicted gene, 32910
Cpgi5705 13 56682382 to 56682835 453 CpG island CpG island 5705
Gm33019 13 56682604 to 56690296 7692 + lncRNA gene predicted gene, 33019
Gm27698 13 56699930 to 56700178 248 + unclassified non-coding RNA gene predicted gene, 27698
Tssr120045 13 56702426 to 56702435 9 + TSS region transcription start site region 120045
Cpgi5706 13 56702491 to 56704005 1514 CpG island CpG island 5706
Tssr120046 13 56702983 to 56703112 129 + TSS region transcription start site region 120046
Smad5 13 56703010 to 56742377 39367 + protein coding gene SMAD family member 5
Tssr120047 13 56703360 to 56703431 71 + TSS region transcription start site region 120047
Tssr120048 13 56703437 to 56703445 8 + TSS region transcription start site region 120048
Tssr120049 13 56703449 to 56703460 11 + TSS region transcription start site region 120049
Tssr120050 13 56703504 to 56703537 33 + TSS region transcription start site region 120050
Gm27301 13 56703641 to 56703767 126 + unclassified non-coding RNA gene predicted gene, 27301
Gm27834 13 56703881 to 56704005 124 + unclassified non-coding RNA gene predicted gene, 27834
Tssr122792 13 56703943 to 56703954 11 - TSS region transcription start site region 122792
Gm27271 13 56704030 to 56704199 169 + unclassified non-coding RNA gene predicted gene, 27271
Tssr120051 13 56706554 to 56706559 5 + TSS region transcription start site region 120051
Tssr120052 13 56728905 to 56728909 4 + TSS region transcription start site region 120052
D13Mit208 13 56732406 to 56732550 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 208