Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:56149331-56429368

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr120002 13 56150379 to 56150383 4 + TSS region transcription start site region 120002
Cpgi5696 13 56151627 to 56151835 208 CpG island CpG island 5696
Tssr120003 13 56152059 to 56152100 41 + TSS region transcription start site region 120003
Tssr122756 13 56152898 to 56152909 11 - TSS region transcription start site region 122756
Tssr120004 13 56159243 to 56159258 15 + TSS region transcription start site region 120004
Tssr120005 13 56159272 to 56159280 8 + TSS region transcription start site region 120005
Tssr120006 13 56163114 to 56163135 21 + TSS region transcription start site region 120006
Tssr120007 13 56166523 to 56166526 3 + TSS region transcription start site region 120007
Gm31657 13 56166600 to 56193544 26944 + lncRNA gene predicted gene, 31657
Gm25148 13 56167600 to 56167722 122 + snoRNA gene predicted gene, 25148
Tssr122757 13 56173157 to 56173161 4 - TSS region transcription start site region 122757
Tssr120008 13 56173464 to 56173475 11 + TSS region transcription start site region 120008
Tifab 13 56173704 to 56178885 5181 - protein coding gene TRAF-interacting protein with forkhead-associated domain, family member B
Tssr122758 13 56176010 to 56176035 25 - TSS region transcription start site region 122758
Tssr122759 13 56176264 to 56176281 17 - TSS region transcription start site region 122759
Tssr122760 13 56176364 to 56176386 22 - TSS region transcription start site region 122760
Tssr122761 13 56178582 to 56178593 11 - TSS region transcription start site region 122761
Tssr122762 13 56178601 to 56178637 36 - TSS region transcription start site region 122762
Tssr122763 13 56178641 to 56178648 7 - TSS region transcription start site region 122763
Tssr122764 13 56178651 to 56178721 70 - TSS region transcription start site region 122764
Tssr122765 13 56178797 to 56178811 14 - TSS region transcription start site region 122765
Tssr122766 13 56178822 to 56178833 11 - TSS region transcription start site region 122766
Tssr122767 13 56178864 to 56178897 33 - TSS region transcription start site region 122767
Tssr122768 13 56178931 to 56178936 5 - TSS region transcription start site region 122768
Tssr122769 13 56178987 to 56179001 14 - TSS region transcription start site region 122769
Tssr122770 13 56179045 to 56179056 11 - TSS region transcription start site region 122770
Tssr120009 13 56181787 to 56181810 23 + TSS region transcription start site region 120009
Tssr122771 13 56183767 to 56183780 13 - TSS region transcription start site region 122771
Gm47104 13 56202231 to 56202937 706 - pseudogene predicted gene, 47104
Cpgi5697 13 56208952 to 56209156 204 CpG island CpG island 5697
Cpgi5698 13 56221160 to 56222712 1552 CpG island CpG island 5698
4930550C17Rik 13 56222224 to 56243940 21716 - lincRNA gene RIKEN cDNA 4930550C17 gene
Neurog1 13 56250492 to 56252163 1671 - protein coding gene neurogenin 1
Cpgi5699 13 56251165 to 56252776 1611 CpG island CpG island 5699
Tssr122772 13 56252175 to 56252181 6 - TSS region transcription start site region 122772
Cpgi5700 13 56258349 to 56259702 1353 CpG island CpG island 5700
Cxcl14 13 56288643 to 56296551 7908 - protein coding gene chemokine (C-X-C motif) ligand 14
Tssr120010 13 56288645 to 56288651 6 + TSS region transcription start site region 120010
Tssr122773 13 56288916 to 56288963 47 - TSS region transcription start site region 122773
Tssr122774 13 56289193 to 56289211 18 - TSS region transcription start site region 122774
Tssr122775 13 56289331 to 56289368 37 - TSS region transcription start site region 122775
Cpgi5701 13 56295665 to 56296953 1288 CpG island CpG island 5701
Tssr122776 13 56295894 to 56295907 13 - TSS region transcription start site region 122776
Tssr122777 13 56296327 to 56296347 20 - TSS region transcription start site region 122777
Tssr122778 13 56296350 to 56296367 17 - TSS region transcription start site region 122778
Tssr122779 13 56296373 to 56296399 26 - TSS region transcription start site region 122779
Gm17878 13 56318325 to 56320334 2009 - pseudogene predicted gene, 17878
D13Mit250 13 56322643 to 56322770 127 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 250
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
4933404M09Rik 13 56337705 to 56339975 2270 unclassified gene RIKEN cDNA 4933404M09 gene
Gm24716 13 56342425 to 56342528 103 - snRNA gene predicted gene, 24716
Gm32003 13 56345760 to 56348847 3087 + lncRNA gene predicted gene, 32003
Gm40960 13 56346559 to 56357181 10622 - lncRNA gene predicted gene, 40960
D13Mit184 13 56347540 to 56347710 170 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 184
Tssr122780 13 56357189 to 56357205 16 - TSS region transcription start site region 122780
Gm10782 13 56362900 to 56368857 5957 + lincRNA gene predicted gene 10782
Tssr120011 13 56372631 to 56372636 5 + TSS region transcription start site region 120011
Gm46418 13 56382708 to 56423812 41104 + lncRNA gene predicted gene, 46418
Tssr122781 13 56426501 to 56426508 7 - TSS region transcription start site region 122781
Tssr120012 13 56426582 to 56426593 11 + TSS region transcription start site region 120012
Gm3045 13 56426594 to 56433753 7159 + protein coding gene predicted gene 3045
Tssr120013 13 56426612 to 56426624 12 + TSS region transcription start site region 120013
Sgp5 13 105285678 to 56322643 -48963035 QTL serum gp70 production 5