Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:55787384-56270234

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Catsper3 13 55784568 to 55808998 24430 + protein coding gene cation channel, sperm associated 3
Cpgi5688 13 55825003 to 55826746 1743 CpG island CpG island 5688
Pitx1 13 55825051 to 55836192 11141 - protein coding gene paired-like homeodomain transcription factor 1
Cpgi5689 13 55828280 to 55828947 667 CpG island CpG island 5689
Cpgi5690 13 55830067 to 55832107 2040 CpG island CpG island 5690
Tssr122726 13 55831230 to 55831261 31 - TSS region transcription start site region 122726
Tssr122727 13 55831263 to 55831280 17 - TSS region transcription start site region 122727
Tssr122728 13 55831378 to 55831395 17 - TSS region transcription start site region 122728
Gm28760 13 55835360 to 55836095 735 - lincRNA gene predicted gene 28760
Cpgi5691 13 55835490 to 55836624 1134 CpG island CpG island 5691
Tssr122729 13 55836071 to 55836099 28 - TSS region transcription start site region 122729
Tssr122730 13 55836106 to 55836155 49 - TSS region transcription start site region 122730
Cpgi5692 13 55836974 to 55837338 364 CpG island CpG island 5692
Tssr119988 13 55895813 to 55895827 14 + TSS region transcription start site region 119988
Gm31542 13 55904608 to 55910101 5493 - lncRNA gene predicted gene, 31542
Tssr122731 13 55904919 to 55904920 1 - TSS region transcription start site region 122731
Tssr119989 13 55905068 to 55905076 8 + TSS region transcription start site region 119989
Tssr119990 13 55905091 to 55905105 14 + TSS region transcription start site region 119990
Tssr119991 13 55905297 to 55905301 4 + TSS region transcription start site region 119991
Tssr119992 13 55926014 to 55926041 27 + TSS region transcription start site region 119992
Tssr119993 13 55929298 to 55929310 12 + TSS region transcription start site region 119993
Tssr119994 13 55929324 to 55929338 14 + TSS region transcription start site region 119994
Tssr119995 13 55957715 to 55957725 10 + TSS region transcription start site region 119995
Gm47071 13 56002265 to 56084849 82584 + antisense lncRNA gene predicted gene, 47071
Tssr119996 13 56006028 to 56006037 9 + TSS region transcription start site region 119996
Gm47072 13 56027384 to 56030234 2850 - pseudogene predicted gene, 47072
Tssr119997 13 56067541 to 56067548 7 + TSS region transcription start site region 119997
Tssr119998 13 56073622 to 56073625 3 + TSS region transcription start site region 119998
H2afy 13 56073622 to 56135626 62004 - protein coding gene H2A histone family, member Y
Tssr122732 13 56074045 to 56074059 14 - TSS region transcription start site region 122732
Tssr122733 13 56088564 to 56088569 5 - TSS region transcription start site region 122733
Tssr122734 13 56088665 to 56088668 3 - TSS region transcription start site region 122734
Tssr122735 13 56089156 to 56089192 36 - TSS region transcription start site region 122735
Tssr122736 13 56096174 to 56096189 15 - TSS region transcription start site region 122736
Tssr119999 13 56104318 to 56104335 17 + TSS region transcription start site region 119999
Cpgi5693 13 56104424 to 56104588 164 CpG island CpG island 5693
Tssr122737 13 56104459 to 56104472 13 - TSS region transcription start site region 122737
Tssr120000 13 56104933 to 56104949 16 + TSS region transcription start site region 120000
Gm31485 13 56110546 to 56116812 6266 - lncRNA gene predicted gene, 31485
Cpgi5694 13 56113152 to 56113335 183 CpG island CpG island 5694
Mdac 13 56127983 to 64961758 8833775 heritable phenotypic marker modifier of Dac
D13Mit113 13 56127983 to 56128131 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 113
Tssr4082 13 56128312 to 56128326 14 + TSS region transcription start site region 4082
Tssr122738 13 56128312 to 56128322 10 - TSS region transcription start site region 122738
Tssr4083 13 56133344 to 56133349 5 + TSS region transcription start site region 4083
Cpgi5695 13 56134611 to 56136045 1434 CpG island CpG island 5695
Tssr122739 13 56135405 to 56135416 11 - TSS region transcription start site region 122739
Tssr122740 13 56135427 to 56135438 11 - TSS region transcription start site region 122740
Tssr122741 13 56135472 to 56135508 36 - TSS region transcription start site region 122741
Tssr122742 13 56135518 to 56135538 20 - TSS region transcription start site region 122742
Tssr122743 13 56135629 to 56135655 26 - TSS region transcription start site region 122743
Tssr122744 13 56135656 to 56135668 12 - TSS region transcription start site region 122744
Tssr122745 13 56135676 to 56135688 12 - TSS region transcription start site region 122745
Tssr122746 13 56135784 to 56135810 26 - TSS region transcription start site region 122746
Tssr122747 13 56135837 to 56135848 11 - TSS region transcription start site region 122747
Tssr122748 13 56135900 to 56135915 15 - TSS region transcription start site region 122748
Tssr122749 13 56135948 to 56135956 8 - TSS region transcription start site region 122749
Tssr122750 13 56136082 to 56136087 5 - TSS region transcription start site region 122750
Tssr122751 13 56137176 to 56137188 12 - TSS region transcription start site region 122751
Tssr122752 13 56138598 to 56138632 34 - TSS region transcription start site region 122752
Tssr122753 13 56141134 to 56141148 14 - TSS region transcription start site region 122753
Tssr122754 13 56141501 to 56141550 49 - TSS region transcription start site region 122754
Tssr122755 13 56142676 to 56142690 14 - TSS region transcription start site region 122755
Tssr120001 13 56144316 to 56144327 11 + TSS region transcription start site region 120001
Tssr120002 13 56150379 to 56150383 4 + TSS region transcription start site region 120002
Cpgi5696 13 56151627 to 56151835 208 CpG island CpG island 5696
Tssr120003 13 56152059 to 56152100 41 + TSS region transcription start site region 120003
Tssr122756 13 56152898 to 56152909 11 - TSS region transcription start site region 122756
Tssr120004 13 56159243 to 56159258 15 + TSS region transcription start site region 120004
Tssr120005 13 56159272 to 56159280 8 + TSS region transcription start site region 120005
Tssr120006 13 56163114 to 56163135 21 + TSS region transcription start site region 120006
Tssr120007 13 56166523 to 56166526 3 + TSS region transcription start site region 120007
Gm31657 13 56166600 to 56193544 26944 + lncRNA gene predicted gene, 31657
Gm25148 13 56167600 to 56167722 122 + snoRNA gene predicted gene, 25148
Tssr122757 13 56173157 to 56173161 4 - TSS region transcription start site region 122757
Tssr120008 13 56173464 to 56173475 11 + TSS region transcription start site region 120008
Tifab 13 56173704 to 56178885 5181 - protein coding gene TRAF-interacting protein with forkhead-associated domain, family member B
Tssr122758 13 56176010 to 56176035 25 - TSS region transcription start site region 122758
Tssr122759 13 56176264 to 56176281 17 - TSS region transcription start site region 122759
Tssr122760 13 56176364 to 56176386 22 - TSS region transcription start site region 122760
Tssr122761 13 56178582 to 56178593 11 - TSS region transcription start site region 122761
Tssr122762 13 56178601 to 56178637 36 - TSS region transcription start site region 122762
Tssr122763 13 56178641 to 56178648 7 - TSS region transcription start site region 122763
Tssr122764 13 56178651 to 56178721 70 - TSS region transcription start site region 122764
Tssr122765 13 56178797 to 56178811 14 - TSS region transcription start site region 122765
Tssr122766 13 56178822 to 56178833 11 - TSS region transcription start site region 122766
Tssr122767 13 56178864 to 56178897 33 - TSS region transcription start site region 122767
Tssr122768 13 56178931 to 56178936 5 - TSS region transcription start site region 122768
Tssr122769 13 56178987 to 56179001 14 - TSS region transcription start site region 122769
Tssr122770 13 56179045 to 56179056 11 - TSS region transcription start site region 122770
Tssr120009 13 56181787 to 56181810 23 + TSS region transcription start site region 120009
Tssr122771 13 56183767 to 56183780 13 - TSS region transcription start site region 122771
Gm47104 13 56202231 to 56202937 706 - pseudogene predicted gene, 47104
Cpgi5697 13 56208952 to 56209156 204 CpG island CpG island 5697
Cpgi5698 13 56221160 to 56222712 1552 CpG island CpG island 5698
4930550C17Rik 13 56222224 to 56243940 21716 - lincRNA gene RIKEN cDNA 4930550C17 gene
Neurog1 13 56250492 to 56252163 1671 - protein coding gene neurogenin 1
Cpgi5699 13 56251165 to 56252776 1611 CpG island CpG island 5699
Tssr122772 13 56252175 to 56252181 6 - TSS region transcription start site region 122772
Cpgi5700 13 56258349 to 56259702 1353 CpG island CpG island 5700