Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:55690091-56120105

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5685 13 55692824 to 55693823 999 CpG island CpG island 5685
Tssr119980 13 55693082 to 55693151 69 + TSS region transcription start site region 119980
B230219D22Rik 13 55693124 to 55703500 10376 + protein coding gene RIKEN cDNA B230219D22 gene
Cpgi5686 13 55714415 to 55715176 761 CpG island CpG island 5686
Tssr119981 13 55714624 to 55714642 18 + TSS region transcription start site region 119981
Txndc15 13 55714650 to 55726227 11577 + protein coding gene thioredoxin domain containing 15
Tssr119982 13 55714662 to 55714756 94 + TSS region transcription start site region 119982
Tssr119983 13 55714762 to 55714773 11 + TSS region transcription start site region 119983
Cpgi5687 13 55727065 to 55728041 976 CpG island CpG island 5687
Tssr119984 13 55727345 to 55727382 37 + TSS region transcription start site region 119984
Pcbd2 13 55727368 to 55776830 49462 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Tssr122723 13 55773363 to 55773364 1 - TSS region transcription start site region 122723
4930451E10Rik 13 55775455 to 55784505 9050 - antisense lncRNA gene RIKEN cDNA 4930451E10 gene
Tssr122724 13 55784463 to 55784473 10 - TSS region transcription start site region 122724
Tssr122725 13 55784502 to 55784510 8 - TSS region transcription start site region 122725
Tssr119985 13 55784558 to 55784564 6 + TSS region transcription start site region 119985
Catsper3 13 55784568 to 55808998 24430 + protein coding gene cation channel, sperm associated 3
Tssr119986 13 55784574 to 55784599 25 + TSS region transcription start site region 119986
Tssr119987 13 55784615 to 55784620 5 + TSS region transcription start site region 119987
Cpgi5688 13 55825003 to 55826746 1743 CpG island CpG island 5688
Pitx1 13 55825051 to 55836192 11141 - protein coding gene paired-like homeodomain transcription factor 1
Cpgi5689 13 55828280 to 55828947 667 CpG island CpG island 5689
Cpgi5690 13 55830067 to 55832107 2040 CpG island CpG island 5690
Tssr122726 13 55831230 to 55831261 31 - TSS region transcription start site region 122726
Tssr122727 13 55831263 to 55831280 17 - TSS region transcription start site region 122727
Tssr122728 13 55831378 to 55831395 17 - TSS region transcription start site region 122728
Gm28760 13 55835360 to 55836095 735 - lincRNA gene predicted gene 28760
Cpgi5691 13 55835490 to 55836624 1134 CpG island CpG island 5691
Tssr122729 13 55836071 to 55836099 28 - TSS region transcription start site region 122729
Tssr122730 13 55836106 to 55836155 49 - TSS region transcription start site region 122730
Cpgi5692 13 55836974 to 55837338 364 CpG island CpG island 5692
Tssr119988 13 55895813 to 55895827 14 + TSS region transcription start site region 119988
Gm31542 13 55904608 to 55910101 5493 - lncRNA gene predicted gene, 31542
Tssr122731 13 55904919 to 55904920 1 - TSS region transcription start site region 122731
Tssr119989 13 55905068 to 55905076 8 + TSS region transcription start site region 119989
Tssr119990 13 55905091 to 55905105 14 + TSS region transcription start site region 119990
Tssr119991 13 55905297 to 55905301 4 + TSS region transcription start site region 119991
Tssr119992 13 55926014 to 55926041 27 + TSS region transcription start site region 119992
Tssr119993 13 55929298 to 55929310 12 + TSS region transcription start site region 119993
Tssr119994 13 55929324 to 55929338 14 + TSS region transcription start site region 119994
Tssr119995 13 55957715 to 55957725 10 + TSS region transcription start site region 119995
Gm47071 13 56002265 to 56084849 82584 + antisense lncRNA gene predicted gene, 47071
Tssr119996 13 56006028 to 56006037 9 + TSS region transcription start site region 119996
Gm47072 13 56027384 to 56030234 2850 - pseudogene predicted gene, 47072
Tssr119997 13 56067541 to 56067548 7 + TSS region transcription start site region 119997
Tssr119998 13 56073622 to 56073625 3 + TSS region transcription start site region 119998
H2afy 13 56073622 to 56135626 62004 - protein coding gene H2A histone family, member Y
Tssr122732 13 56074045 to 56074059 14 - TSS region transcription start site region 122732
Tssr122733 13 56088564 to 56088569 5 - TSS region transcription start site region 122733
Tssr122734 13 56088665 to 56088668 3 - TSS region transcription start site region 122734
Tssr122735 13 56089156 to 56089192 36 - TSS region transcription start site region 122735
Tssr122736 13 56096174 to 56096189 15 - TSS region transcription start site region 122736
Tssr119999 13 56104318 to 56104335 17 + TSS region transcription start site region 119999
Cpgi5693 13 56104424 to 56104588 164 CpG island CpG island 5693
Tssr122737 13 56104459 to 56104472 13 - TSS region transcription start site region 122737
Tssr120000 13 56104933 to 56104949 16 + TSS region transcription start site region 120000
Gm31485 13 56110546 to 56116812 6266 - lncRNA gene predicted gene, 31485
Cpgi5694 13 56113152 to 56113335 183 CpG island CpG island 5694