Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:55575900-56695915

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236 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Cpgi5681 13 55592938 to 55593635 697 CpG island CpG island 5681
Tmed9 13 55593135 to 55597697 4562 + protein coding gene transmembrane p24 trafficking protein 9
Tssr119967 13 55593137 to 55593177 40 + TSS region transcription start site region 119967
Tssr119968 13 55597302 to 55597311 9 + TSS region transcription start site region 119968
Cpgi5682 13 55599833 to 55600383 550 CpG island CpG island 5682
B4galt7 13 55599896 to 55610443 10547 + protein coding gene xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
Tssr119969 13 55600055 to 55600135 80 + TSS region transcription start site region 119969
Gm15911 13 55602182 to 55604783 2601 - antisense lncRNA gene predicted gene 15911
Tssr119970 13 55609773 to 55609780 7 + TSS region transcription start site region 119970
Tssr119971 13 55609931 to 55609935 4 + TSS region transcription start site region 119971
Cpgi5683 13 55622628 to 55623527 899 CpG island CpG island 5683
Tssr119972 13 55622999 to 55623084 85 + TSS region transcription start site region 119972
Caml 13 55623005 to 55632411 9406 + protein coding gene calcium modulating ligand
Cpgi5684 13 55634691 to 55635591 900 CpG island CpG island 5684
Tssr119973 13 55635002 to 55635036 34 + TSS region transcription start site region 119973
Ddx46 13 55635027 to 55681256 46229 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Tssr119974 13 55639865 to 55639892 27 + TSS region transcription start site region 119974
Tssr119975 13 55645386 to 55645406 20 + TSS region transcription start site region 119975
Tssr119976 13 55645421 to 55645432 11 + TSS region transcription start site region 119976
Tssr119977 13 55647620 to 55647637 17 + TSS region transcription start site region 119977
Tssr122722 13 55647692 to 55647727 35 - TSS region transcription start site region 122722
Tssr119978 13 55650444 to 55650486 42 + TSS region transcription start site region 119978
Tssr119979 13 55652924 to 55652949 25 + TSS region transcription start site region 119979
Cpgi5685 13 55692824 to 55693823 999 CpG island CpG island 5685
Tssr119980 13 55693082 to 55693151 69 + TSS region transcription start site region 119980
B230219D22Rik 13 55693124 to 55703500 10376 + protein coding gene RIKEN cDNA B230219D22 gene
Cpgi5686 13 55714415 to 55715176 761 CpG island CpG island 5686
Tssr119981 13 55714624 to 55714642 18 + TSS region transcription start site region 119981
Txndc15 13 55714650 to 55726227 11577 + protein coding gene thioredoxin domain containing 15
Tssr119982 13 55714662 to 55714756 94 + TSS region transcription start site region 119982
Tssr119983 13 55714762 to 55714773 11 + TSS region transcription start site region 119983
Cpgi5687 13 55727065 to 55728041 976 CpG island CpG island 5687
Tssr119984 13 55727345 to 55727382 37 + TSS region transcription start site region 119984
Pcbd2 13 55727368 to 55776830 49462 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Tssr122723 13 55773363 to 55773364 1 - TSS region transcription start site region 122723
4930451E10Rik 13 55775455 to 55784505 9050 - antisense lncRNA gene RIKEN cDNA 4930451E10 gene
Tssr122724 13 55784463 to 55784473 10 - TSS region transcription start site region 122724
Tssr122725 13 55784502 to 55784510 8 - TSS region transcription start site region 122725
Tssr119985 13 55784558 to 55784564 6 + TSS region transcription start site region 119985
Catsper3 13 55784568 to 55808998 24430 + protein coding gene cation channel, sperm associated 3
Tssr119986 13 55784574 to 55784599 25 + TSS region transcription start site region 119986
Tssr119987 13 55784615 to 55784620 5 + TSS region transcription start site region 119987
Cpgi5688 13 55825003 to 55826746 1743 CpG island CpG island 5688
Pitx1 13 55825051 to 55836192 11141 - protein coding gene paired-like homeodomain transcription factor 1
Cpgi5689 13 55828280 to 55828947 667 CpG island CpG island 5689
Cpgi5690 13 55830067 to 55832107 2040 CpG island CpG island 5690
Tssr122726 13 55831230 to 55831261 31 - TSS region transcription start site region 122726
Tssr122727 13 55831263 to 55831280 17 - TSS region transcription start site region 122727
Tssr122728 13 55831378 to 55831395 17 - TSS region transcription start site region 122728
Gm28760 13 55835360 to 55836095 735 - lincRNA gene predicted gene 28760
Cpgi5691 13 55835490 to 55836624 1134 CpG island CpG island 5691
Tssr122729 13 55836071 to 55836099 28 - TSS region transcription start site region 122729
Tssr122730 13 55836106 to 55836155 49 - TSS region transcription start site region 122730
Cpgi5692 13 55836974 to 55837338 364 CpG island CpG island 5692
Tssr119988 13 55895813 to 55895827 14 + TSS region transcription start site region 119988
Gm31542 13 55904608 to 55910101 5493 - lncRNA gene predicted gene, 31542
Tssr122731 13 55904919 to 55904920 1 - TSS region transcription start site region 122731
Tssr119989 13 55905068 to 55905076 8 + TSS region transcription start site region 119989
Tssr119990 13 55905091 to 55905105 14 + TSS region transcription start site region 119990
Tssr119991 13 55905297 to 55905301 4 + TSS region transcription start site region 119991
Tssr119992 13 55926014 to 55926041 27 + TSS region transcription start site region 119992
Tssr119993 13 55929298 to 55929310 12 + TSS region transcription start site region 119993
Tssr119994 13 55929324 to 55929338 14 + TSS region transcription start site region 119994
Tssr119995 13 55957715 to 55957725 10 + TSS region transcription start site region 119995
Gm47071 13 56002265 to 56084849 82584 + antisense lncRNA gene predicted gene, 47071
Tssr119996 13 56006028 to 56006037 9 + TSS region transcription start site region 119996
Gm47072 13 56027384 to 56030234 2850 - pseudogene predicted gene, 47072
Tssr119997 13 56067541 to 56067548 7 + TSS region transcription start site region 119997
H2afy 13 56073622 to 56135626 62004 - protein coding gene H2A histone family, member Y
Tssr119998 13 56073622 to 56073625 3 + TSS region transcription start site region 119998
Tssr122732 13 56074045 to 56074059 14 - TSS region transcription start site region 122732
Tssr122733 13 56088564 to 56088569 5 - TSS region transcription start site region 122733
Tssr122734 13 56088665 to 56088668 3 - TSS region transcription start site region 122734
Tssr122735 13 56089156 to 56089192 36 - TSS region transcription start site region 122735
Tssr122736 13 56096174 to 56096189 15 - TSS region transcription start site region 122736
Tssr119999 13 56104318 to 56104335 17 + TSS region transcription start site region 119999
Cpgi5693 13 56104424 to 56104588 164 CpG island CpG island 5693
Tssr122737 13 56104459 to 56104472 13 - TSS region transcription start site region 122737
Tssr120000 13 56104933 to 56104949 16 + TSS region transcription start site region 120000
Gm31485 13 56110546 to 56116812 6266 - lncRNA gene predicted gene, 31485
Cpgi5694 13 56113152 to 56113335 183 CpG island CpG island 5694
D13Mit113 13 56127983 to 56128131 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 113
Mdac 13 56127983 to 64961758 8833775 heritable phenotypic marker modifier of Dac
Tssr122738 13 56128312 to 56128322 10 - TSS region transcription start site region 122738
Tssr4082 13 56128312 to 56128326 14 + TSS region transcription start site region 4082
Tssr4083 13 56133344 to 56133349 5 + TSS region transcription start site region 4083
Cpgi5695 13 56134611 to 56136045 1434 CpG island CpG island 5695
Tssr122739 13 56135405 to 56135416 11 - TSS region transcription start site region 122739
Tssr122740 13 56135427 to 56135438 11 - TSS region transcription start site region 122740
Tssr122741 13 56135472 to 56135508 36 - TSS region transcription start site region 122741
Tssr122742 13 56135518 to 56135538 20 - TSS region transcription start site region 122742
Tssr122743 13 56135629 to 56135655 26 - TSS region transcription start site region 122743
Tssr122744 13 56135656 to 56135668 12 - TSS region transcription start site region 122744
Tssr122745 13 56135676 to 56135688 12 - TSS region transcription start site region 122745
Tssr122746 13 56135784 to 56135810 26 - TSS region transcription start site region 122746
Tssr122747 13 56135837 to 56135848 11 - TSS region transcription start site region 122747
Tssr122748 13 56135900 to 56135915 15 - TSS region transcription start site region 122748
Tssr122749 13 56135948 to 56135956 8 - TSS region transcription start site region 122749
Tssr122750 13 56136082 to 56136087 5 - TSS region transcription start site region 122750
Tssr122751 13 56137176 to 56137188 12 - TSS region transcription start site region 122751
Tssr122752 13 56138598 to 56138632 34 - TSS region transcription start site region 122752
Tssr122753 13 56141134 to 56141148 14 - TSS region transcription start site region 122753
Tssr122754 13 56141501 to 56141550 49 - TSS region transcription start site region 122754
Tssr122755 13 56142676 to 56142690 14 - TSS region transcription start site region 122755
Tssr120001 13 56144316 to 56144327 11 + TSS region transcription start site region 120001
Tssr120002 13 56150379 to 56150383 4 + TSS region transcription start site region 120002
Cpgi5696 13 56151627 to 56151835 208 CpG island CpG island 5696
Tssr120003 13 56152059 to 56152100 41 + TSS region transcription start site region 120003
Tssr122756 13 56152898 to 56152909 11 - TSS region transcription start site region 122756
Tssr120004 13 56159243 to 56159258 15 + TSS region transcription start site region 120004
Tssr120005 13 56159272 to 56159280 8 + TSS region transcription start site region 120005
Tssr120006 13 56163114 to 56163135 21 + TSS region transcription start site region 120006
Tssr120007 13 56166523 to 56166526 3 + TSS region transcription start site region 120007
Gm31657 13 56166600 to 56193544 26944 + lncRNA gene predicted gene, 31657
Gm25148 13 56167600 to 56167722 122 + snoRNA gene predicted gene, 25148
Tssr122757 13 56173157 to 56173161 4 - TSS region transcription start site region 122757
Tssr120008 13 56173464 to 56173475 11 + TSS region transcription start site region 120008
Tifab 13 56173704 to 56178885 5181 - protein coding gene TRAF-interacting protein with forkhead-associated domain, family member B
Tssr122758 13 56176010 to 56176035 25 - TSS region transcription start site region 122758
Tssr122759 13 56176264 to 56176281 17 - TSS region transcription start site region 122759
Tssr122760 13 56176364 to 56176386 22 - TSS region transcription start site region 122760
Tssr122761 13 56178582 to 56178593 11 - TSS region transcription start site region 122761
Tssr122762 13 56178601 to 56178637 36 - TSS region transcription start site region 122762
Tssr122763 13 56178641 to 56178648 7 - TSS region transcription start site region 122763
Tssr122764 13 56178651 to 56178721 70 - TSS region transcription start site region 122764
Tssr122765 13 56178797 to 56178811 14 - TSS region transcription start site region 122765
Tssr122766 13 56178822 to 56178833 11 - TSS region transcription start site region 122766
Tssr122767 13 56178864 to 56178897 33 - TSS region transcription start site region 122767
Tssr122768 13 56178931 to 56178936 5 - TSS region transcription start site region 122768
Tssr122769 13 56178987 to 56179001 14 - TSS region transcription start site region 122769
Tssr122770 13 56179045 to 56179056 11 - TSS region transcription start site region 122770
Tssr120009 13 56181787 to 56181810 23 + TSS region transcription start site region 120009
Tssr122771 13 56183767 to 56183780 13 - TSS region transcription start site region 122771
Gm47104 13 56202231 to 56202937 706 - pseudogene predicted gene, 47104
Cpgi5697 13 56208952 to 56209156 204 CpG island CpG island 5697
Cpgi5698 13 56221160 to 56222712 1552 CpG island CpG island 5698
4930550C17Rik 13 56222224 to 56243940 21716 - lincRNA gene RIKEN cDNA 4930550C17 gene
Neurog1 13 56250492 to 56252163 1671 - protein coding gene neurogenin 1
Cpgi5699 13 56251165 to 56252776 1611 CpG island CpG island 5699
Tssr122772 13 56252175 to 56252181 6 - TSS region transcription start site region 122772
Cpgi5700 13 56258349 to 56259702 1353 CpG island CpG island 5700
Cxcl14 13 56288643 to 56296551 7908 - protein coding gene chemokine (C-X-C motif) ligand 14
Tssr120010 13 56288645 to 56288651 6 + TSS region transcription start site region 120010
Tssr122773 13 56288916 to 56288963 47 - TSS region transcription start site region 122773
Tssr122774 13 56289193 to 56289211 18 - TSS region transcription start site region 122774
Tssr122775 13 56289331 to 56289368 37 - TSS region transcription start site region 122775
Cpgi5701 13 56295665 to 56296953 1288 CpG island CpG island 5701
Tssr122776 13 56295894 to 56295907 13 - TSS region transcription start site region 122776
Tssr122777 13 56296327 to 56296347 20 - TSS region transcription start site region 122777
Tssr122778 13 56296350 to 56296367 17 - TSS region transcription start site region 122778
Tssr122779 13 56296373 to 56296399 26 - TSS region transcription start site region 122779
Gm17878 13 56318325 to 56320334 2009 - pseudogene predicted gene, 17878
D13Mit250 13 56322643 to 56322770 127 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 250
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
4933404M09Rik 13 56337705 to 56339975 2270 unclassified gene RIKEN cDNA 4933404M09 gene
Gm24716 13 56342425 to 56342528 103 - snRNA gene predicted gene, 24716
Gm32003 13 56345760 to 56348847 3087 + lncRNA gene predicted gene, 32003
Gm40960 13 56346559 to 56357181 10622 - lncRNA gene predicted gene, 40960
D13Mit184 13 56347540 to 56347710 170 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 184
Tssr122780 13 56357189 to 56357205 16 - TSS region transcription start site region 122780
Gm10782 13 56362900 to 56368857 5957 + lincRNA gene predicted gene 10782
Tssr120011 13 56372631 to 56372636 5 + TSS region transcription start site region 120011
Gm46418 13 56382708 to 56423812 41104 + lncRNA gene predicted gene, 46418
Tssr122781 13 56426501 to 56426508 7 - TSS region transcription start site region 122781
Tssr120012 13 56426582 to 56426593 11 + TSS region transcription start site region 120012
Gm3045 13 56426594 to 56433753 7159 + protein coding gene predicted gene 3045
Tssr120013 13 56426612 to 56426624 12 + TSS region transcription start site region 120013
Slc25a48 13 56437964 to 56472367 34403 + protein coding gene solute carrier family 25, member 48
Cpgi5702 13 56438269 to 56438779 510 CpG island CpG island 5702
Tssr120014 13 56438302 to 56438324 22 + TSS region transcription start site region 120014
Tssr120015 13 56438343 to 56438369 26 + TSS region transcription start site region 120015
Tssr120016 13 56438381 to 56438393 12 + TSS region transcription start site region 120016
Tssr120017 13 56438915 to 56438917 2 + TSS region transcription start site region 120017
Tssr120018 13 56441471 to 56441475 4 + TSS region transcription start site region 120018
Tssr122782 13 56472420 to 56472426 6 - TSS region transcription start site region 122782
Il9 13 56479277 to 56482246 2969 - protein coding gene interleukin 9
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
Cia28 13 56481436 to 96102654 39621218 QTL collagen induced arthritis QTL 28
Bmd13 13 56481436 to 56481584 148 QTL bone mineral density 13
Bwem2 13 56481436 to 56481584 148 QTL body weight day 30 males 2
Cpfd5 13 56481436 to 56481584 148 QTL cerebellum pattern fissures, declival 5
D13Mit13 13 56481436 to 56481584 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 13
Tssr122783 13 56482153 to 56482197 44 - TSS region transcription start site region 122783
Tssr122784 13 56482255 to 56482258 3 - TSS region transcription start site region 122784
Tssr122785 13 56488101 to 56488131 30 - TSS region transcription start site region 122785
Tssr120019 13 56502088 to 56502101 13 + TSS region transcription start site region 120019
Tssr122786 13 56503793 to 56503796 3 - TSS region transcription start site region 122786
Tssr120020 13 56505888 to 56505919 31 + TSS region transcription start site region 120020
Cpgi5703 13 56522141 to 56522843 702 CpG island CpG island 5703
Tssr120021 13 56522449 to 56522495 46 + TSS region transcription start site region 120021
Fbxl21 13 56522472 to 56537898 15426 + protein coding gene F-box and leucine-rich repeat protein 21
Tssr120022 13 56522497 to 56522516 19 + TSS region transcription start site region 120022
Tssr120023 13 56522520 to 56522540 20 + TSS region transcription start site region 120023
Gm38602 13 56526112 to 56527002 890 - lncRNA gene predicted gene, 38602
Lect2 13 56542464 to 56548502 6038 - protein coding gene leukocyte cell-derived chemotaxin 2
D13Bc1 13 56544585 to 56544686 101 DNA segment DNA segment, Chr 13, University of British Columbia 1
Tssr122787 13 56548418 to 56548468 50 - TSS region transcription start site region 122787
Tssr122788 13 56548474 to 56548487 13 - TSS region transcription start site region 122788
Tssr122789 13 56548502 to 56548518 16 - TSS region transcription start site region 122789