Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:55541378-56121395

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tesq1 13 20431342 to 55572704 35141362 QTL testis weight QTL 1
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Fam193b 13 55539316 to 55571120 31804 - protein coding gene family with sequence similarity 193, member B
Gm46417 13 55547571 to 55548859 1288 + lncRNA gene predicted gene, 46417
Tssr122719 13 55568072 to 55568077 5 - TSS region transcription start site region 122719
Cpgi5679 13 55569755 to 55569928 173 CpG island CpG island 5679
Cpgi5680 13 55570259 to 55571622 1363 CpG island CpG island 5680
Tssr122720 13 55571087 to 55571108 21 - TSS region transcription start site region 122720
Tssr122721 13 55571118 to 55571123 5 - TSS region transcription start site region 122721
Gm31364 13 55571216 to 55574475 3259 + lncRNA gene predicted gene, 31364
D13Mit21 13 55572541 to 55572704 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 21
D13Mit20 13 55572545 to 55572704 159 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 20
Cfbw5 13 55572545 to 55572704 159 QTL cystic fibrosis body weight 5
Cpgi5681 13 55592938 to 55593635 697 CpG island CpG island 5681
Tmed9 13 55593135 to 55597697 4562 + protein coding gene transmembrane p24 trafficking protein 9
Tssr119967 13 55593137 to 55593177 40 + TSS region transcription start site region 119967
Tssr119968 13 55597302 to 55597311 9 + TSS region transcription start site region 119968
Cpgi5682 13 55599833 to 55600383 550 CpG island CpG island 5682
B4galt7 13 55599896 to 55610443 10547 + protein coding gene xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
Tssr119969 13 55600055 to 55600135 80 + TSS region transcription start site region 119969
Gm15911 13 55602182 to 55604783 2601 - antisense lncRNA gene predicted gene 15911
Tssr119970 13 55609773 to 55609780 7 + TSS region transcription start site region 119970
Tssr119971 13 55609931 to 55609935 4 + TSS region transcription start site region 119971
Cpgi5683 13 55622628 to 55623527 899 CpG island CpG island 5683
Tssr119972 13 55622999 to 55623084 85 + TSS region transcription start site region 119972
Caml 13 55623005 to 55632411 9406 + protein coding gene calcium modulating ligand
Cpgi5684 13 55634691 to 55635591 900 CpG island CpG island 5684
Tssr119973 13 55635002 to 55635036 34 + TSS region transcription start site region 119973
Ddx46 13 55635027 to 55681256 46229 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Tssr119974 13 55639865 to 55639892 27 + TSS region transcription start site region 119974
Tssr119975 13 55645386 to 55645406 20 + TSS region transcription start site region 119975
Tssr119976 13 55645421 to 55645432 11 + TSS region transcription start site region 119976
Tssr119977 13 55647620 to 55647637 17 + TSS region transcription start site region 119977
Tssr122722 13 55647692 to 55647727 35 - TSS region transcription start site region 122722
Tssr119978 13 55650444 to 55650486 42 + TSS region transcription start site region 119978
Tssr119979 13 55652924 to 55652949 25 + TSS region transcription start site region 119979
Cpgi5685 13 55692824 to 55693823 999 CpG island CpG island 5685
Tssr119980 13 55693082 to 55693151 69 + TSS region transcription start site region 119980
B230219D22Rik 13 55693124 to 55703500 10376 + protein coding gene RIKEN cDNA B230219D22 gene
Cpgi5686 13 55714415 to 55715176 761 CpG island CpG island 5686
Tssr119981 13 55714624 to 55714642 18 + TSS region transcription start site region 119981
Txndc15 13 55714650 to 55726227 11577 + protein coding gene thioredoxin domain containing 15
Tssr119982 13 55714662 to 55714756 94 + TSS region transcription start site region 119982
Tssr119983 13 55714762 to 55714773 11 + TSS region transcription start site region 119983
Cpgi5687 13 55727065 to 55728041 976 CpG island CpG island 5687
Tssr119984 13 55727345 to 55727382 37 + TSS region transcription start site region 119984
Pcbd2 13 55727368 to 55776830 49462 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Tssr122723 13 55773363 to 55773364 1 - TSS region transcription start site region 122723
4930451E10Rik 13 55775455 to 55784505 9050 - antisense lncRNA gene RIKEN cDNA 4930451E10 gene
Tssr122724 13 55784463 to 55784473 10 - TSS region transcription start site region 122724
Tssr122725 13 55784502 to 55784510 8 - TSS region transcription start site region 122725
Tssr119985 13 55784558 to 55784564 6 + TSS region transcription start site region 119985
Catsper3 13 55784568 to 55808998 24430 + protein coding gene cation channel, sperm associated 3
Tssr119986 13 55784574 to 55784599 25 + TSS region transcription start site region 119986
Tssr119987 13 55784615 to 55784620 5 + TSS region transcription start site region 119987
Cpgi5688 13 55825003 to 55826746 1743 CpG island CpG island 5688
Pitx1 13 55825051 to 55836192 11141 - protein coding gene paired-like homeodomain transcription factor 1
Cpgi5689 13 55828280 to 55828947 667 CpG island CpG island 5689
Cpgi5690 13 55830067 to 55832107 2040 CpG island CpG island 5690
Tssr122726 13 55831230 to 55831261 31 - TSS region transcription start site region 122726
Tssr122727 13 55831263 to 55831280 17 - TSS region transcription start site region 122727
Tssr122728 13 55831378 to 55831395 17 - TSS region transcription start site region 122728
Gm28760 13 55835360 to 55836095 735 - lincRNA gene predicted gene 28760
Cpgi5691 13 55835490 to 55836624 1134 CpG island CpG island 5691
Tssr122729 13 55836071 to 55836099 28 - TSS region transcription start site region 122729
Tssr122730 13 55836106 to 55836155 49 - TSS region transcription start site region 122730
Cpgi5692 13 55836974 to 55837338 364 CpG island CpG island 5692
Tssr119988 13 55895813 to 55895827 14 + TSS region transcription start site region 119988
Gm31542 13 55904608 to 55910101 5493 - lncRNA gene predicted gene, 31542
Tssr122731 13 55904919 to 55904920 1 - TSS region transcription start site region 122731
Tssr119989 13 55905068 to 55905076 8 + TSS region transcription start site region 119989
Tssr119990 13 55905091 to 55905105 14 + TSS region transcription start site region 119990
Tssr119991 13 55905297 to 55905301 4 + TSS region transcription start site region 119991
Tssr119992 13 55926014 to 55926041 27 + TSS region transcription start site region 119992
Tssr119993 13 55929298 to 55929310 12 + TSS region transcription start site region 119993
Tssr119994 13 55929324 to 55929338 14 + TSS region transcription start site region 119994
Tssr119995 13 55957715 to 55957725 10 + TSS region transcription start site region 119995
Gm47071 13 56002265 to 56084849 82584 + antisense lncRNA gene predicted gene, 47071
Tssr119996 13 56006028 to 56006037 9 + TSS region transcription start site region 119996
Gm47072 13 56027384 to 56030234 2850 - pseudogene predicted gene, 47072
Tssr119997 13 56067541 to 56067548 7 + TSS region transcription start site region 119997
Tssr119998 13 56073622 to 56073625 3 + TSS region transcription start site region 119998
H2afy 13 56073622 to 56135626 62004 - protein coding gene H2A histone family, member Y
Tssr122732 13 56074045 to 56074059 14 - TSS region transcription start site region 122732
Tssr122733 13 56088564 to 56088569 5 - TSS region transcription start site region 122733
Tssr122734 13 56088665 to 56088668 3 - TSS region transcription start site region 122734
Tssr122735 13 56089156 to 56089192 36 - TSS region transcription start site region 122735
Tssr122736 13 56096174 to 56096189 15 - TSS region transcription start site region 122736
Tssr119999 13 56104318 to 56104335 17 + TSS region transcription start site region 119999
Cpgi5693 13 56104424 to 56104588 164 CpG island CpG island 5693
Tssr122737 13 56104459 to 56104472 13 - TSS region transcription start site region 122737
Tssr120000 13 56104933 to 56104949 16 + TSS region transcription start site region 120000
Gm31485 13 56110546 to 56116812 6266 - lncRNA gene predicted gene, 31485
Cpgi5694 13 56113152 to 56113335 183 CpG island CpG island 5694
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16