Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:55505002-55765036

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tesq1 13 20431342 to 55572704 35141362 QTL testis weight QTL 1
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Pdlim7 13 55497487 to 55513473 15986 - protein coding gene PDZ and LIM domain 7
Mir6945 13 55507625 to 55507692 67 - miRNA gene microRNA 6945
Tssr122708 13 55508299 to 55508326 27 - TSS region transcription start site region 122708
Tssr122709 13 55512339 to 55512352 13 - TSS region transcription start site region 122709
Tssr122710 13 55512357 to 55512369 12 - TSS region transcription start site region 122710
Cpgi5676 13 55512484 to 55513780 1296 CpG island CpG island 5676
Tssr122711 13 55513427 to 55513443 16 - TSS region transcription start site region 122711
Dok3 13 55523231 to 55529296 6065 - protein coding gene docking protein 3
Cpgi5677 13 55523942 to 55524235 293 CpG island CpG island 5677
Tssr122712 13 55528445 to 55528449 4 - TSS region transcription start site region 122712
Tssr122713 13 55528511 to 55528561 50 - TSS region transcription start site region 122713
Tssr122714 13 55528562 to 55528580 18 - TSS region transcription start site region 122714
Tssr122715 13 55529340 to 55529367 27 - TSS region transcription start site region 122715
Tssr122716 13 55529380 to 55529385 5 - TSS region transcription start site region 122716
Ddx41 13 55530410 to 55536658 6248 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Cpgi5678 13 55535813 to 55536927 1114 CpG island CpG island 5678
Gm46416 13 55535995 to 55536624 629 + antisense lncRNA gene predicted gene, 46416
Tssr122717 13 55536395 to 55536434 39 - TSS region transcription start site region 122717
Tssr122718 13 55536504 to 55536547 43 - TSS region transcription start site region 122718
Fam193b 13 55539316 to 55571120 31804 - protein coding gene family with sequence similarity 193, member B
Gm46417 13 55547571 to 55548859 1288 + lncRNA gene predicted gene, 46417
Tssr122719 13 55568072 to 55568077 5 - TSS region transcription start site region 122719
Cpgi5679 13 55569755 to 55569928 173 CpG island CpG island 5679
Cpgi5680 13 55570259 to 55571622 1363 CpG island CpG island 5680
Tssr122720 13 55571087 to 55571108 21 - TSS region transcription start site region 122720
Tssr122721 13 55571118 to 55571123 5 - TSS region transcription start site region 122721
Gm31364 13 55571216 to 55574475 3259 + lncRNA gene predicted gene, 31364
D13Mit21 13 55572541 to 55572704 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 21
Cfbw5 13 55572545 to 55572704 159 QTL cystic fibrosis body weight 5
D13Mit20 13 55572545 to 55572704 159 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 20
Cpgi5681 13 55592938 to 55593635 697 CpG island CpG island 5681
Tmed9 13 55593135 to 55597697 4562 + protein coding gene transmembrane p24 trafficking protein 9
Tssr119967 13 55593137 to 55593177 40 + TSS region transcription start site region 119967
Tssr119968 13 55597302 to 55597311 9 + TSS region transcription start site region 119968
Cpgi5682 13 55599833 to 55600383 550 CpG island CpG island 5682
B4galt7 13 55599896 to 55610443 10547 + protein coding gene xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
Tssr119969 13 55600055 to 55600135 80 + TSS region transcription start site region 119969
Gm15911 13 55602182 to 55604783 2601 - antisense lncRNA gene predicted gene 15911
Tssr119970 13 55609773 to 55609780 7 + TSS region transcription start site region 119970
Tssr119971 13 55609931 to 55609935 4 + TSS region transcription start site region 119971
Cpgi5683 13 55622628 to 55623527 899 CpG island CpG island 5683
Tssr119972 13 55622999 to 55623084 85 + TSS region transcription start site region 119972
Caml 13 55623005 to 55632411 9406 + protein coding gene calcium modulating ligand
Cpgi5684 13 55634691 to 55635591 900 CpG island CpG island 5684
Tssr119973 13 55635002 to 55635036 34 + TSS region transcription start site region 119973
Ddx46 13 55635027 to 55681256 46229 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Tssr119974 13 55639865 to 55639892 27 + TSS region transcription start site region 119974
Tssr119975 13 55645386 to 55645406 20 + TSS region transcription start site region 119975
Tssr119976 13 55645421 to 55645432 11 + TSS region transcription start site region 119976
Tssr119977 13 55647620 to 55647637 17 + TSS region transcription start site region 119977
Tssr122722 13 55647692 to 55647727 35 - TSS region transcription start site region 122722
Tssr119978 13 55650444 to 55650486 42 + TSS region transcription start site region 119978
Tssr119979 13 55652924 to 55652949 25 + TSS region transcription start site region 119979
Cpgi5685 13 55692824 to 55693823 999 CpG island CpG island 5685
Tssr119980 13 55693082 to 55693151 69 + TSS region transcription start site region 119980
B230219D22Rik 13 55693124 to 55703500 10376 + protein coding gene RIKEN cDNA B230219D22 gene
Cpgi5686 13 55714415 to 55715176 761 CpG island CpG island 5686
Tssr119981 13 55714624 to 55714642 18 + TSS region transcription start site region 119981
Txndc15 13 55714650 to 55726227 11577 + protein coding gene thioredoxin domain containing 15
Tssr119982 13 55714662 to 55714756 94 + TSS region transcription start site region 119982
Tssr119983 13 55714762 to 55714773 11 + TSS region transcription start site region 119983
Cpgi5687 13 55727065 to 55728041 976 CpG island CpG island 5687
Tssr119984 13 55727345 to 55727382 37 + TSS region transcription start site region 119984
Pcbd2 13 55727368 to 55776830 49462 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16