Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:55402345-56052382

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tesq1 13 20431342 to 55572704 35141362 QTL testis weight QTL 1
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Slc34a1 13 55399622 to 55414695 15073 + protein coding gene solute carrier family 34 (sodium phosphate), member 1
Tssr119949 13 55402913 to 55402923 10 + TSS region transcription start site region 119949
Tssr4079 13 55402936 to 55402946 10 + TSS region transcription start site region 4079
Tssr119950 13 55403036 to 55403057 21 + TSS region transcription start site region 119950
Tssr119951 13 55405081 to 55405086 5 + TSS region transcription start site region 119951
Tssr119952 13 55409028 to 55409045 17 + TSS region transcription start site region 119952
Tssr119953 13 55412038 to 55412050 12 + TSS region transcription start site region 119953
Tssr119954 13 55412270 to 55412279 9 + TSS region transcription start site region 119954
Tssr119955 13 55413184 to 55413191 7 + TSS region transcription start site region 119955
Tssr122693 13 55413474 to 55413480 6 - TSS region transcription start site region 122693
Tssr119956 13 55413568 to 55413575 7 + TSS region transcription start site region 119956
Tssr119957 13 55413582 to 55413592 10 + TSS region transcription start site region 119957
Pfn3 13 55414688 to 55415232 544 - protein coding gene profilin 3
Cpgi5668 13 55414723 to 55415341 618 CpG island CpG island 5668
BC038268 13 55414900 to 55415591 691 protein coding gene cDNA sequence BC038268
Tssr122694 13 55415216 to 55415251 35 - TSS region transcription start site region 122694
F12 13 55417958 to 55426793 8835 - protein coding gene coagulation factor XII (Hageman factor)
Cpgi5669 13 55418230 to 55418575 345 CpG island CpG island 5669
Cpgi5670 13 55420122 to 55421519 1397 CpG island CpG island 5670
Tssr119958 13 55422423 to 55422438 15 + TSS region transcription start site region 119958
Tssr122695 13 55426769 to 55426780 11 - TSS region transcription start site region 122695
Tssr122696 13 55426783 to 55426795 12 - TSS region transcription start site region 122696
Tssr122697 13 55426798 to 55426811 13 - TSS region transcription start site region 122697
Tssr122698 13 55432258 to 55432265 7 - TSS region transcription start site region 122698
Cpgi5671 13 55444504 to 55446101 1597 CpG island CpG island 5671
Tssr122699 13 55444874 to 55444896 22 - TSS region transcription start site region 122699
Grk6 13 55445072 to 55460927 15855 + protein coding gene G protein-coupled receptor kinase 6
Tssr119959 13 55445301 to 55445374 73 + TSS region transcription start site region 119959
Tssr122700 13 55447616 to 55447640 24 - TSS region transcription start site region 122700
Tssr4080 13 55449961 to 55449969 8 + TSS region transcription start site region 4080
Tssr4081 13 55449975 to 55450008 33 + TSS region transcription start site region 4081
Mir6943 13 55453106 to 55453171 65 + miRNA gene microRNA 6943
Cpgi5672 13 55463711 to 55465387 1676 CpG island CpG island 5672
Tssr119960 13 55464237 to 55464319 82 + TSS region transcription start site region 119960
Prr7 13 55464267 to 55473154 8887 + protein coding gene proline rich 7 (synaptic)
E130112B07Rik 13 55469207 to 55470397 1190 unclassified gene RIKEN cDNA E130112B07 gene
Cpgi5673 13 55471190 to 55473220 2030 CpG island CpG island 5673
Tssr119961 13 55471680 to 55471707 27 + TSS region transcription start site region 119961
Tssr119962 13 55471716 to 55471757 41 + TSS region transcription start site region 119962
Tssr119963 13 55471761 to 55471773 12 + TSS region transcription start site region 119963
Tssr119964 13 55472287 to 55472302 15 + TSS region transcription start site region 119964
Dbn1 13 55473428 to 55488110 14682 - protein coding gene drebrin 1
Tssr122701 13 55474514 to 55474527 13 - TSS region transcription start site region 122701
Tssr122702 13 55476189 to 55476212 23 - TSS region transcription start site region 122702
Tssr119965 13 55477578 to 55477589 11 + TSS region transcription start site region 119965
Mir6944 13 55477681 to 55477776 95 - miRNA gene microRNA 6944
Tssr119966 13 55478656 to 55478659 3 + TSS region transcription start site region 119966
Tssr122703 13 55482783 to 55482804 21 - TSS region transcription start site region 122703
Cpgi5674 13 55483598 to 55483810 212 CpG island CpG island 5674
Tssr122704 13 55483673 to 55483684 11 - TSS region transcription start site region 122704
Tssr122705 13 55483700 to 55483753 53 - TSS region transcription start site region 122705
Cpgi5675 13 55487064 to 55488461 1397 CpG island CpG island 5675
Tssr122706 13 55488027 to 55488032 5 - TSS region transcription start site region 122706
Tssr122707 13 55488038 to 55488089 51 - TSS region transcription start site region 122707
Pdlim7 13 55497487 to 55513473 15986 - protein coding gene PDZ and LIM domain 7
Mir6945 13 55507625 to 55507692 67 - miRNA gene microRNA 6945
Tssr122708 13 55508299 to 55508326 27 - TSS region transcription start site region 122708
Tssr122709 13 55512339 to 55512352 13 - TSS region transcription start site region 122709
Tssr122710 13 55512357 to 55512369 12 - TSS region transcription start site region 122710
Cpgi5676 13 55512484 to 55513780 1296 CpG island CpG island 5676
Tssr122711 13 55513427 to 55513443 16 - TSS region transcription start site region 122711
Dok3 13 55523231 to 55529296 6065 - protein coding gene docking protein 3
Cpgi5677 13 55523942 to 55524235 293 CpG island CpG island 5677
Tssr122712 13 55528445 to 55528449 4 - TSS region transcription start site region 122712
Tssr122713 13 55528511 to 55528561 50 - TSS region transcription start site region 122713
Tssr122714 13 55528562 to 55528580 18 - TSS region transcription start site region 122714
Tssr122715 13 55529340 to 55529367 27 - TSS region transcription start site region 122715
Tssr122716 13 55529380 to 55529385 5 - TSS region transcription start site region 122716
Ddx41 13 55530410 to 55536658 6248 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Cpgi5678 13 55535813 to 55536927 1114 CpG island CpG island 5678
Gm46416 13 55535995 to 55536624 629 + antisense lncRNA gene predicted gene, 46416
Tssr122717 13 55536395 to 55536434 39 - TSS region transcription start site region 122717
Tssr122718 13 55536504 to 55536547 43 - TSS region transcription start site region 122718
Fam193b 13 55539316 to 55571120 31804 - protein coding gene family with sequence similarity 193, member B
Gm46417 13 55547571 to 55548859 1288 + lncRNA gene predicted gene, 46417
Tssr122719 13 55568072 to 55568077 5 - TSS region transcription start site region 122719
Cpgi5679 13 55569755 to 55569928 173 CpG island CpG island 5679
Cpgi5680 13 55570259 to 55571622 1363 CpG island CpG island 5680
Tssr122720 13 55571087 to 55571108 21 - TSS region transcription start site region 122720
Tssr122721 13 55571118 to 55571123 5 - TSS region transcription start site region 122721
Gm31364 13 55571216 to 55574475 3259 + lncRNA gene predicted gene, 31364
D13Mit21 13 55572541 to 55572704 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 21
D13Mit20 13 55572545 to 55572704 159 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 20
Cfbw5 13 55572545 to 55572704 159 QTL cystic fibrosis body weight 5
Cpgi5681 13 55592938 to 55593635 697 CpG island CpG island 5681
Tmed9 13 55593135 to 55597697 4562 + protein coding gene transmembrane p24 trafficking protein 9
Tssr119967 13 55593137 to 55593177 40 + TSS region transcription start site region 119967
Tssr119968 13 55597302 to 55597311 9 + TSS region transcription start site region 119968
Cpgi5682 13 55599833 to 55600383 550 CpG island CpG island 5682
B4galt7 13 55599896 to 55610443 10547 + protein coding gene xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
Tssr119969 13 55600055 to 55600135 80 + TSS region transcription start site region 119969
Gm15911 13 55602182 to 55604783 2601 - antisense lncRNA gene predicted gene 15911
Tssr119970 13 55609773 to 55609780 7 + TSS region transcription start site region 119970
Tssr119971 13 55609931 to 55609935 4 + TSS region transcription start site region 119971
Cpgi5683 13 55622628 to 55623527 899 CpG island CpG island 5683
Tssr119972 13 55622999 to 55623084 85 + TSS region transcription start site region 119972
Caml 13 55623005 to 55632411 9406 + protein coding gene calcium modulating ligand
Cpgi5684 13 55634691 to 55635591 900 CpG island CpG island 5684
Tssr119973 13 55635002 to 55635036 34 + TSS region transcription start site region 119973
Ddx46 13 55635027 to 55681256 46229 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Tssr119974 13 55639865 to 55639892 27 + TSS region transcription start site region 119974
Tssr119975 13 55645386 to 55645406 20 + TSS region transcription start site region 119975
Tssr119976 13 55645421 to 55645432 11 + TSS region transcription start site region 119976
Tssr119977 13 55647620 to 55647637 17 + TSS region transcription start site region 119977
Tssr122722 13 55647692 to 55647727 35 - TSS region transcription start site region 122722
Tssr119978 13 55650444 to 55650486 42 + TSS region transcription start site region 119978
Tssr119979 13 55652924 to 55652949 25 + TSS region transcription start site region 119979
Cpgi5685 13 55692824 to 55693823 999 CpG island CpG island 5685
Tssr119980 13 55693082 to 55693151 69 + TSS region transcription start site region 119980
B230219D22Rik 13 55693124 to 55703500 10376 + protein coding gene RIKEN cDNA B230219D22 gene
Cpgi5686 13 55714415 to 55715176 761 CpG island CpG island 5686
Tssr119981 13 55714624 to 55714642 18 + TSS region transcription start site region 119981
Txndc15 13 55714650 to 55726227 11577 + protein coding gene thioredoxin domain containing 15
Tssr119982 13 55714662 to 55714756 94 + TSS region transcription start site region 119982
Tssr119983 13 55714762 to 55714773 11 + TSS region transcription start site region 119983
Cpgi5687 13 55727065 to 55728041 976 CpG island CpG island 5687
Tssr119984 13 55727345 to 55727382 37 + TSS region transcription start site region 119984
Pcbd2 13 55727368 to 55776830 49462 + protein coding gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Tssr122723 13 55773363 to 55773364 1 - TSS region transcription start site region 122723
4930451E10Rik 13 55775455 to 55784505 9050 - antisense lncRNA gene RIKEN cDNA 4930451E10 gene
Tssr122724 13 55784463 to 55784473 10 - TSS region transcription start site region 122724
Tssr122725 13 55784502 to 55784510 8 - TSS region transcription start site region 122725
Tssr119985 13 55784558 to 55784564 6 + TSS region transcription start site region 119985
Catsper3 13 55784568 to 55808998 24430 + protein coding gene cation channel, sperm associated 3
Tssr119986 13 55784574 to 55784599 25 + TSS region transcription start site region 119986
Tssr119987 13 55784615 to 55784620 5 + TSS region transcription start site region 119987
Cpgi5688 13 55825003 to 55826746 1743 CpG island CpG island 5688
Pitx1 13 55825051 to 55836192 11141 - protein coding gene paired-like homeodomain transcription factor 1
Cpgi5689 13 55828280 to 55828947 667 CpG island CpG island 5689
Cpgi5690 13 55830067 to 55832107 2040 CpG island CpG island 5690
Tssr122726 13 55831230 to 55831261 31 - TSS region transcription start site region 122726
Tssr122727 13 55831263 to 55831280 17 - TSS region transcription start site region 122727
Tssr122728 13 55831378 to 55831395 17 - TSS region transcription start site region 122728
Gm28760 13 55835360 to 55836095 735 - lincRNA gene predicted gene 28760
Cpgi5691 13 55835490 to 55836624 1134 CpG island CpG island 5691
Tssr122729 13 55836071 to 55836099 28 - TSS region transcription start site region 122729
Tssr122730 13 55836106 to 55836155 49 - TSS region transcription start site region 122730
Cpgi5692 13 55836974 to 55837338 364 CpG island CpG island 5692
Tssr119988 13 55895813 to 55895827 14 + TSS region transcription start site region 119988
Gm31542 13 55904608 to 55910101 5493 - lncRNA gene predicted gene, 31542
Tssr122731 13 55904919 to 55904920 1 - TSS region transcription start site region 122731
Tssr119989 13 55905068 to 55905076 8 + TSS region transcription start site region 119989
Tssr119990 13 55905091 to 55905105 14 + TSS region transcription start site region 119990
Tssr119991 13 55905297 to 55905301 4 + TSS region transcription start site region 119991
Tssr119992 13 55926014 to 55926041 27 + TSS region transcription start site region 119992
Tssr119993 13 55929298 to 55929310 12 + TSS region transcription start site region 119993
Tssr119994 13 55929324 to 55929338 14 + TSS region transcription start site region 119994
Tssr119995 13 55957715 to 55957725 10 + TSS region transcription start site region 119995
Gm47071 13 56002265 to 56084849 82584 + antisense lncRNA gene predicted gene, 47071
Tssr119996 13 56006028 to 56006037 9 + TSS region transcription start site region 119996
Gm47072 13 56027384 to 56030234 2850 - pseudogene predicted gene, 47072
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3