Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54840579-55071589

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm16250 13 54840649 to 54840904 255 - pseudogene predicted gene 16250
Gm40959 13 54858135 to 54874869 16734 - lncRNA gene predicted gene, 40959
Cpgi5653 13 54874599 to 54875063 464 CpG island CpG island 5653
Gm31188 13 54876135 to 54878598 2463 + lncRNA gene predicted gene, 31188
Tssr119903 13 54876160 to 54876185 25 + TSS region transcription start site region 119903
Gm29431 13 54887470 to 54888013 543 + lincRNA gene predicted gene 29431
Tssr119904 13 54913226 to 54913227 1 + TSS region transcription start site region 119904
Tssr119905 13 54913229 to 54913240 11 + TSS region transcription start site region 119905
5330429C05Rik 13 54913235 to 54914479 1244 + lincRNA gene RIKEN cDNA 5330429C05 gene
Tssr119906 13 54913249 to 54913250 1 + TSS region transcription start site region 119906
4930526F13Rik 13 54927748 to 54930753 3005 - lincRNA gene RIKEN cDNA 4930526F13 gene
Tssr122657 13 54930199 to 54930213 14 - TSS region transcription start site region 122657
Tssr122658 13 54930229 to 54930246 17 - TSS region transcription start site region 122658
Tssr122659 13 54930257 to 54930265 8 - TSS region transcription start site region 122659
Gm31313 13 54933420 to 54949336 15916 - lncRNA gene predicted gene, 31313
Cpgi5654 13 54948427 to 54950370 1943 CpG island CpG island 5654
Tssr119907 13 54949363 to 54949386 23 + TSS region transcription start site region 119907
Tssr119908 13 54949388 to 54949481 93 + TSS region transcription start site region 119908
Unc5a 13 54949411 to 55006018 56607 + protein coding gene unc-5 netrin receptor A
Cpgi5655 13 54955579 to 54956589 1010 CpG island CpG island 5655
Tssr4075 13 54991434 to 54991435 1 + TSS region transcription start site region 4075
Tssr119909 13 55003213 to 55003228 15 + TSS region transcription start site region 119909
Tssr119910 13 55005985 to 55006015 30 + TSS region transcription start site region 119910
Hk3 13 55005985 to 55021385 15400 - protein coding gene hexokinase 3
Tssr122660 13 55006919 to 55006928 9 - TSS region transcription start site region 122660
Tssr119911 13 55016784 to 55016801 17 + TSS region transcription start site region 119911
Tssr122661 13 55018097 to 55018108 11 - TSS region transcription start site region 122661
Tssr122662 13 55018197 to 55018208 11 - TSS region transcription start site region 122662
Tssr122663 13 55018369 to 55018382 13 - TSS region transcription start site region 122663
Tssr122664 13 55018531 to 55018545 14 - TSS region transcription start site region 122664
Tssr122665 13 55018547 to 55018561 14 - TSS region transcription start site region 122665
Tssr122666 13 55019130 to 55019140 10 - TSS region transcription start site region 122666
Tssr122667 13 55020126 to 55020135 9 - TSS region transcription start site region 122667
Tssr122668 13 55021196 to 55021239 43 - TSS region transcription start site region 122668
Tssr122669 13 55021287 to 55021303 16 - TSS region transcription start site region 122669
Tssr122670 13 55021472 to 55021485 13 - TSS region transcription start site region 122670
Tssr122671 13 55021486 to 55021493 7 - TSS region transcription start site region 122671
Tssr122672 13 55021544 to 55021556 12 - TSS region transcription start site region 122672
Tssr122673 13 55022771 to 55022783 12 - TSS region transcription start site region 122673
Uimc1 13 55027880 to 55100300 72420 - protein coding gene ubiquitin interaction motif containing 1