Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54653213-55353228

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Faf2 13 54621784 to 54664063 42279 + protein coding gene Fas associated factor family member 2
D13Mit96 13 54655739 to 54655845 106 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96
D13Mit96.1 13 54655814 to 54656022 208 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96.1
Rn4.5s-ps3 13 54656909 to 54657002 93 - pseudogene 4.5s RNA, pseudogene 3
Rnf44 13 54679399 to 54693907 14508 - protein coding gene ring finger protein 44
Tssr122624 13 54683157 to 54683185 28 - TSS region transcription start site region 122624
Tssr122625 13 54683687 to 54683719 32 - TSS region transcription start site region 122625
Tssr122626 13 54684082 to 54684114 32 - TSS region transcription start site region 122626
Cpgi5646 13 54686862 to 54688425 1563 CpG island CpG island 5646
Tssr122627 13 54687216 to 54687232 16 - TSS region transcription start site region 122627
Tssr119886 13 54687309 to 54687323 14 + TSS region transcription start site region 119886
Tssr122628 13 54687623 to 54687643 20 - TSS region transcription start site region 122628
Tssr122629 13 54687644 to 54687688 44 - TSS region transcription start site region 122629
Tssr122630 13 54687696 to 54687809 113 - TSS region transcription start site region 122630
Tssr119887 13 54687872 to 54687887 15 + TSS region transcription start site region 119887
Tssr119888 13 54687933 to 54687955 22 + TSS region transcription start site region 119888
Tssr122631 13 54688065 to 54688093 28 - TSS region transcription start site region 122631
Tssr122632 13 54688099 to 54688145 46 - TSS region transcription start site region 122632
Tssr122633 13 54688184 to 54688211 27 - TSS region transcription start site region 122633
Tssr122634 13 54688246 to 54688263 17 - TSS region transcription start site region 122634
Tssr122635 13 54688264 to 54688284 20 - TSS region transcription start site region 122635
Tssr122636 13 54691786 to 54691793 7 - TSS region transcription start site region 122636
Cpgi5647 13 54693345 to 54694710 1365 CpG island CpG island 5647
Tssr122637 13 54693794 to 54693888 94 - TSS region transcription start site region 122637
Tssr119889 13 54701435 to 54701446 11 + TSS region transcription start site region 119889
Tssr119890 13 54701457 to 54701479 22 + TSS region transcription start site region 119890
Cdhr2 13 54701463 to 54736662 35199 + protein coding gene cadherin-related family member 2
Tssr119891 13 54717608 to 54717617 9 + TSS region transcription start site region 119891
Tssr119892 13 54718560 to 54718572 12 + TSS region transcription start site region 119892
Tssr119893 13 54720145 to 54720161 16 + TSS region transcription start site region 119893
Tssr119894 13 54726791 to 54726802 11 + TSS region transcription start site region 119894
Tssr119895 13 54730243 to 54730246 3 + TSS region transcription start site region 119895
Tssr119896 13 54731718 to 54731728 10 + TSS region transcription start site region 119896
Tssr119897 13 54731775 to 54731790 15 + TSS region transcription start site region 119897
Tssr4074 13 54731819 to 54731828 9 + TSS region transcription start site region 4074
Tssr119898 13 54732029 to 54732053 24 + TSS region transcription start site region 119898
Gprin1 13 54736671 to 54749874 13203 - protein coding gene G protein-regulated inducer of neurite outgrowth 1
Cpgi5648 13 54737122 to 54738998 1876 CpG island CpG island 5648
9530001D17Rik 13 54741951 to 54742331 380 unclassified gene RIKEN cDNA 9530001D17 gene
Cpgi5649 13 54748861 to 54750295 1434 CpG island CpG island 5649
Tssr122638 13 54749613 to 54749625 12 - TSS region transcription start site region 122638
Tssr122639 13 54749627 to 54749697 70 - TSS region transcription start site region 122639
Tssr122640 13 54749849 to 54749893 44 - TSS region transcription start site region 122640
Tssr122641 13 54749908 to 54749920 12 - TSS region transcription start site region 122641
Cpgi5650 13 54757950 to 54759033 1083 CpG island CpG island 5650
Sncb 13 54758860 to 54766595 7735 - protein coding gene synuclein, beta
Tssr122642 13 54759208 to 54759218 10 - TSS region transcription start site region 122642
Tssr122643 13 54759305 to 54759313 8 - TSS region transcription start site region 122643
Tssr122644 13 54759374 to 54759403 29 - TSS region transcription start site region 122644
Tssr122645 13 54759433 to 54759441 8 - TSS region transcription start site region 122645
Tssr122646 13 54759507 to 54759518 11 - TSS region transcription start site region 122646
Tssr122647 13 54759917 to 54759955 38 - TSS region transcription start site region 122647
Tssr122648 13 54762695 to 54762709 14 - TSS region transcription start site region 122648
Tssr122649 13 54762713 to 54762729 16 - TSS region transcription start site region 122649
Tssr122650 13 54762948 to 54762971 23 - TSS region transcription start site region 122650
Tssr122651 13 54765593 to 54765615 22 - TSS region transcription start site region 122651
Tssr122652 13 54765629 to 54765648 19 - TSS region transcription start site region 122652
Cpgi5651 13 54765636 to 54766710 1074 CpG island CpG island 5651
Tssr122653 13 54765704 to 54765720 16 - TSS region transcription start site region 122653
Tssr122654 13 54765848 to 54765907 59 - TSS region transcription start site region 122654
Tssr122655 13 54766500 to 54766503 3 - TSS region transcription start site region 122655
Tssr122656 13 54766553 to 54766572 19 - TSS region transcription start site region 122656
Gm16249 13 54777514 to 54783091 5577 - antisense lncRNA gene predicted gene 16249
Tssr119899 13 54783988 to 54783993 5 + TSS region transcription start site region 119899
Eif4e1b 13 54783998 to 54788459 4461 + protein coding gene eukaryotic translation initiation factor 4E family member 1B
Cpgi5652 13 54788997 to 54790131 1134 CpG island CpG island 5652
Tspan17 13 54789377 to 54796776 7399 + protein coding gene tetraspanin 17
Tssr119900 13 54789426 to 54789497 71 + TSS region transcription start site region 119900
Tssr119901 13 54789500 to 54789509 9 + TSS region transcription start site region 119901
Tssr119902 13 54789984 to 54789989 5 + TSS region transcription start site region 119902
Gm16250 13 54840649 to 54840904 255 - pseudogene predicted gene 16250
Gm40959 13 54858135 to 54874869 16734 - lncRNA gene predicted gene, 40959
Cpgi5653 13 54874599 to 54875063 464 CpG island CpG island 5653
Gm31188 13 54876135 to 54878598 2463 + lncRNA gene predicted gene, 31188
Tssr119903 13 54876160 to 54876185 25 + TSS region transcription start site region 119903
Gm29431 13 54887470 to 54888013 543 + lincRNA gene predicted gene 29431
Tssr119904 13 54913226 to 54913227 1 + TSS region transcription start site region 119904
Tssr119905 13 54913229 to 54913240 11 + TSS region transcription start site region 119905
5330429C05Rik 13 54913235 to 54914479 1244 + lincRNA gene RIKEN cDNA 5330429C05 gene
Tssr119906 13 54913249 to 54913250 1 + TSS region transcription start site region 119906
4930526F13Rik 13 54927748 to 54930753 3005 - lincRNA gene RIKEN cDNA 4930526F13 gene
Tssr122657 13 54930199 to 54930213 14 - TSS region transcription start site region 122657
Tssr122658 13 54930229 to 54930246 17 - TSS region transcription start site region 122658
Tssr122659 13 54930257 to 54930265 8 - TSS region transcription start site region 122659
Gm31313 13 54933420 to 54949336 15916 - lncRNA gene predicted gene, 31313
Cpgi5654 13 54948427 to 54950370 1943 CpG island CpG island 5654
Tssr119907 13 54949363 to 54949386 23 + TSS region transcription start site region 119907
Tssr119908 13 54949388 to 54949481 93 + TSS region transcription start site region 119908
Unc5a 13 54949411 to 55006018 56607 + protein coding gene unc-5 netrin receptor A
Cpgi5655 13 54955579 to 54956589 1010 CpG island CpG island 5655
Tssr4075 13 54991434 to 54991435 1 + TSS region transcription start site region 4075
Tssr119909 13 55003213 to 55003228 15 + TSS region transcription start site region 119909
Tssr119910 13 55005985 to 55006015 30 + TSS region transcription start site region 119910
Hk3 13 55005985 to 55021385 15400 - protein coding gene hexokinase 3
Tssr122660 13 55006919 to 55006928 9 - TSS region transcription start site region 122660
Tssr119911 13 55016784 to 55016801 17 + TSS region transcription start site region 119911
Tssr122661 13 55018097 to 55018108 11 - TSS region transcription start site region 122661
Tssr122662 13 55018197 to 55018208 11 - TSS region transcription start site region 122662
Tssr122663 13 55018369 to 55018382 13 - TSS region transcription start site region 122663
Tssr122664 13 55018531 to 55018545 14 - TSS region transcription start site region 122664
Tssr122665 13 55018547 to 55018561 14 - TSS region transcription start site region 122665
Tssr122666 13 55019130 to 55019140 10 - TSS region transcription start site region 122666
Tssr122667 13 55020126 to 55020135 9 - TSS region transcription start site region 122667
Tssr122668 13 55021196 to 55021239 43 - TSS region transcription start site region 122668
Tssr122669 13 55021287 to 55021303 16 - TSS region transcription start site region 122669
Tssr122670 13 55021472 to 55021485 13 - TSS region transcription start site region 122670
Tssr122671 13 55021486 to 55021493 7 - TSS region transcription start site region 122671
Tssr122672 13 55021544 to 55021556 12 - TSS region transcription start site region 122672
Tssr122673 13 55022771 to 55022783 12 - TSS region transcription start site region 122673
Uimc1 13 55027880 to 55100300 72420 - protein coding gene ubiquitin interaction motif containing 1
Tssr122674 13 55073796 to 55073811 15 - TSS region transcription start site region 122674
Gm6344 13 55085777 to 55086259 482 + pseudogene predicted gene 6344
Cpgi5656 13 55099406 to 55100550 1144 CpG island CpG island 5656
Tssr122675 13 55100216 to 55100242 26 - TSS region transcription start site region 122675
Tssr122676 13 55100248 to 55100321 73 - TSS region transcription start site region 122676
Cpgi5657 13 55105192 to 55106060 868 CpG island CpG island 5657
Tssr119912 13 55105264 to 55105275 11 + TSS region transcription start site region 119912
Tssr119913 13 55105290 to 55105340 50 + TSS region transcription start site region 119913
Zfp346 13 55105311 to 55134825 29514 + protein coding gene zinc finger protein 346
4432414F05Rik 13 55109794 to 55112339 2545 unclassified gene RIKEN cDNA 4432414F05 gene
A130082J08Rik 13 55124747 to 55126630 1883 unclassified gene RIKEN cDNA A130082J08 gene
Gm46415 13 55127839 to 55128183 344 - protein coding gene predicted gene, 46415
Gm17617 13 55132962 to 55133548 586 - protein coding gene predicted gene, 17617
Cpgi5658 13 55152438 to 55153437 999 CpG island CpG island 5658
Tssr119914 13 55152801 to 55152833 32 + TSS region transcription start site region 119914
Fgfr4 13 55152818 to 55168759 15941 + protein coding gene fibroblast growth factor receptor 4
Cpgi5659 13 55159856 to 55160371 515 CpG island CpG island 5659
Cpgi5660 13 55161301 to 55161805 504 CpG island CpG island 5660
Cpgi5661 13 55171912 to 55172106 194 CpG island CpG island 5661
Tssr122677 13 55182558 to 55182565 7 - TSS region transcription start site region 122677
3930401B19Rik 13 55184770 to 55186646 1876 unclassified gene RIKEN cDNA 3930401B19 gene
Cpgi5662 13 55190076 to 55190667 591 CpG island CpG island 5662
Tssr122678 13 55190186 to 55190236 50 - TSS region transcription start site region 122678
Tssr119915 13 55190417 to 55190440 23 + TSS region transcription start site region 119915
Tssr119916 13 55190450 to 55190465 15 + TSS region transcription start site region 119916
Cpgi5663 13 55209719 to 55213014 3295 CpG island CpG island 5663
Tssr119917 13 55209776 to 55209788 12 + TSS region transcription start site region 119917
Nsd1 13 55209782 to 55318325 108543 + protein coding gene nuclear receptor-binding SET-domain protein 1
Tssr119918 13 55209805 to 55209812 7 + TSS region transcription start site region 119918
Tssr119919 13 55210315 to 55210357 42 + TSS region transcription start site region 119919
Tssr119920 13 55210400 to 55210470 70 + TSS region transcription start site region 119920
Tssr119921 13 55210924 to 55210958 34 + TSS region transcription start site region 119921
Tssr122679 13 55211354 to 55211370 16 - TSS region transcription start site region 122679
Tssr119922 13 55211519 to 55211561 42 + TSS region transcription start site region 119922
Tssr122680 13 55211543 to 55211554 11 - TSS region transcription start site region 122680
Tssr122681 13 55211557 to 55211571 14 - TSS region transcription start site region 122681
Tssr119923 13 55211678 to 55211730 52 + TSS region transcription start site region 119923
Tssr119924 13 55211785 to 55211861 76 + TSS region transcription start site region 119924
Tssr119925 13 55211888 to 55211921 33 + TSS region transcription start site region 119925
Tssr119926 13 55212053 to 55212086 33 + TSS region transcription start site region 119926
Tssr119927 13 55212719 to 55212751 32 + TSS region transcription start site region 119927
Tssr119928 13 55220655 to 55220668 13 + TSS region transcription start site region 119928
Tssr119929 13 55223137 to 55223140 3 + TSS region transcription start site region 119929
Tssr119930 13 55242924 to 55242927 3 + TSS region transcription start site region 119930
Tssr119931 13 55247905 to 55247953 48 + TSS region transcription start site region 119931
Tssr119932 13 55253119 to 55253121 2 + TSS region transcription start site region 119932
Gm47816 13 55253225 to 55254401 1176 - pseudogene predicted gene, 47816
Tssr119933 13 55265198 to 55265205 7 + TSS region transcription start site region 119933
D13Ertd376e 13 55270911 to 55271120 209 DNA segment DNA segment, Chr 13, ERATO Doi 376, expressed
Tssr119934 13 55272944 to 55272948 4 + TSS region transcription start site region 119934
Tssr119935 13 55290256 to 55290285 29 + TSS region transcription start site region 119935
Tssr119936 13 55315529 to 55315541 12 + TSS region transcription start site region 119936
Tssr119937 13 55316865 to 55316869 4 + TSS region transcription start site region 119937
Rab24 13 55319743 to 55321946 2203 - protein coding gene RAB24, member RAS oncogene family
Cpgi5664 13 55321294 to 55322603 1309 CpG island CpG island 5664
Tssr122682 13 55321897 to 55321911 14 - TSS region transcription start site region 122682
Tssr122683 13 55321928 to 55321974 46 - TSS region transcription start site region 122683
Tssr119938 13 55321991 to 55322053 62 + TSS region transcription start site region 119938
Prelid1 13 55322055 to 55325272 3217 + protein coding gene PRELI domain containing 1
Tssr4076 13 55322084 to 55322092 8 + TSS region transcription start site region 4076
Tssr4077 13 55322138 to 55322150 12 + TSS region transcription start site region 4077
Tssr4078 13 55322163 to 55322175 12 + TSS region transcription start site region 4078
Tssr119939 13 55322744 to 55322764 20 + TSS region transcription start site region 119939
Tssr119940 13 55322883 to 55322898 15 + TSS region transcription start site region 119940
Mxd3 13 55325168 to 55329823 4655 - protein coding gene Max dimerization protein 3
Cpgi5665 13 55329246 to 55330658 1412 CpG island CpG island 5665
Tssr122684 13 55329723 to 55329776 53 - TSS region transcription start site region 122684
Tssr119941 13 55335943 to 55335993 50 + TSS region transcription start site region 119941
Lman2 13 55343833 to 55362783 18950 - protein coding gene lectin, mannose-binding 2
Tssr122685 13 55349939 to 55349943 4 - TSS region transcription start site region 122685