Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54218428-56743110

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637 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tesq1 13 20431342 to 55572704 35141362 QTL testis weight QTL 1
Hrh2 13 54192129 to 54236180 44051 + protein coding gene histamine receptor H2
Gm16578 13 54219453 to 54223023 3570 - antisense lncRNA gene predicted gene 16578
Tssr122602 13 54219951 to 54219962 11 - TSS region transcription start site region 122602
Gm48615 13 54245296 to 54245584 288 + lincRNA gene predicted gene, 48615
Cpgi5632 13 54282664 to 54282959 295 CpG island CpG island 5632
Gm40955 13 54283242 to 54289078 5836 + lncRNA gene predicted gene, 40955
Gm48623 13 54301959 to 54312797 10838 + lincRNA gene predicted gene, 48623
Cpgi5633 13 54302431 to 54303615 1184 CpG island CpG island 5633
Tssr119843 13 54302514 to 54302671 157 + TSS region transcription start site region 119843
Tssr119844 13 54302784 to 54302800 16 + TSS region transcription start site region 119844
Tssr122603 13 54303491 to 54303517 26 - TSS region transcription start site region 122603
Tssr119845 13 54304815 to 54304829 14 + TSS region transcription start site region 119845
Gm48622 13 54309905 to 54327880 17975 - lincRNA gene predicted gene, 48622
D13Mit297 13 54326741 to 54326871 130 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-297
Tssr119846 13 54336029 to 54336033 4 + TSS region transcription start site region 119846
Tssr119847 13 54346641 to 54346645 4 + TSS region transcription start site region 119847
Tssr119848 13 54366436 to 54366437 1 + TSS region transcription start site region 119848
Tssr119849 13 54371340 to 54371352 12 + TSS region transcription start site region 119849
Cpgi5634 13 54371342 to 54372083 741 CpG island CpG island 5634
Cplx2 13 54371349 to 54383917 12568 + protein coding gene complexin 2
Tssr119850 13 54371356 to 54371387 31 + TSS region transcription start site region 119850
Tssr119851 13 54371423 to 54371428 5 + TSS region transcription start site region 119851
Tssr119852 13 54371441 to 54371466 25 + TSS region transcription start site region 119852
Tssr119853 13 54371467 to 54371498 31 + TSS region transcription start site region 119853
Tssr119854 13 54371500 to 54371516 16 + TSS region transcription start site region 119854
Tssr119855 13 54371527 to 54371532 5 + TSS region transcription start site region 119855
Cpgi5635 13 54372761 to 54373049 288 CpG island CpG island 5635
Tssr119856 13 54378579 to 54378590 11 + TSS region transcription start site region 119856
Cpgi5636 13 54378739 to 54379255 516 CpG island CpG island 5636
Tssr122604 13 54378913 to 54378941 28 - TSS region transcription start site region 122604
Tssr122605 13 54379539 to 54379578 39 - TSS region transcription start site region 122605
Tssr119857 13 54379758 to 54379776 18 + TSS region transcription start site region 119857
Tssr119858 13 54379818 to 54379829 11 + TSS region transcription start site region 119858
Tssr122606 13 54380218 to 54380227 9 - TSS region transcription start site region 122606
Tssr119859 13 54380286 to 54380303 17 + TSS region transcription start site region 119859
Tssr119860 13 54380594 to 54380610 16 + TSS region transcription start site region 119860
Tssr119861 13 54381774 to 54381786 12 + TSS region transcription start site region 119861
Tssr119862 13 54382084 to 54382095 11 + TSS region transcription start site region 119862
Tssr119863 13 54382535 to 54382552 17 + TSS region transcription start site region 119863
Tssr119864 13 54382568 to 54382583 15 + TSS region transcription start site region 119864
Tssr119865 13 54382642 to 54382653 11 + TSS region transcription start site region 119865
Tssr119866 13 54382667 to 54382686 19 + TSS region transcription start site region 119866
Tssr119867 13 54382733 to 54382752 19 + TSS region transcription start site region 119867
Tssr119868 13 54382763 to 54382783 20 + TSS region transcription start site region 119868
Tssr119869 13 54382793 to 54382866 73 + TSS region transcription start site region 119869
Gm16248 13 54399092 to 54399334 242 - lincRNA gene predicted gene 16248
Tssr122607 13 54399246 to 54399251 5 - TSS region transcription start site region 122607
Tssr122608 13 54412367 to 54412389 22 - TSS region transcription start site region 122608
Gm22668 13 54429441 to 54429700 259 - unclassified non-coding RNA gene predicted gene, 22668
Thoc3 13 54458837 to 54468840 10003 - protein coding gene THO complex 3
Cpgi5637 13 54468255 to 54469015 760 CpG island CpG island 5637
Tssr122609 13 54468805 to 54468862 57 - TSS region transcription start site region 122609
D13Mit54 13 54478184 to 54478304 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 54
Cpgi5638 13 54481397 to 54481611 214 CpG island CpG island 5638
Gm2830 13 54499705 to 54500089 384 - pseudogene predicted gene 2830
Cpgi5639 13 54503257 to 54504575 1318 CpG island CpG island 5639
Tssr119870 13 54503762 to 54503769 7 + TSS region transcription start site region 119870
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Simc1 13 54503779 to 54551290 47511 + protein coding gene SUMO-interacting motifs containing 1
Tssr119871 13 54503786 to 54503800 14 + TSS region transcription start site region 119871
Tssr122610 13 54504309 to 54504326 17 - TSS region transcription start site region 122610
Tssr119872 13 54517504 to 54517508 4 + TSS region transcription start site region 119872
4833439L19Rik 13 54551218 to 54565382 14164 - protein coding gene RIKEN cDNA 4833439L19 gene
Tssr122611 13 54551907 to 54551939 32 - TSS region transcription start site region 122611
Cpgi5640 13 54564663 to 54565548 885 CpG island CpG island 5640
Tssr122612 13 54565299 to 54565362 63 - TSS region transcription start site region 122612
Tssr122613 13 54565368 to 54565386 18 - TSS region transcription start site region 122613
Tssr119873 13 54571020 to 54571069 49 + TSS region transcription start site region 119873
Cpgi5641 13 54574848 to 54575879 1031 CpG island CpG island 5641
Tssr119874 13 54575008 to 54575017 9 + TSS region transcription start site region 119874
Arl10 13 54575015 to 54581128 6113 + protein coding gene ADP-ribosylation factor-like 10
Tssr119875 13 54575020 to 54575093 73 + TSS region transcription start site region 119875
Tssr119876 13 54577902 to 54577918 16 + TSS region transcription start site region 119876
Gm24195 13 54578113 to 54578249 136 + miRNA gene predicted gene, 24195
Tssr119877 13 54581126 to 54581170 44 + TSS region transcription start site region 119877
Tssr119878 13 54581696 to 54581702 6 + TSS region transcription start site region 119878
Nop16 13 54584191 to 54590074 5883 - protein coding gene NOP16 nucleolar protein
Tssr122614 13 54589142 to 54589147 5 - TSS region transcription start site region 122614
Cpgi5642 13 54589620 to 54591081 1461 CpG island CpG island 5642
Tssr119879 13 54589926 to 54589952 26 + TSS region transcription start site region 119879
Tssr122615 13 54590013 to 54590034 21 - TSS region transcription start site region 122615
Tssr122616 13 54590047 to 54590089 42 - TSS region transcription start site region 122616
Tssr119880 13 54590204 to 54590218 14 + TSS region transcription start site region 119880
Tssr119881 13 54590221 to 54590267 46 + TSS region transcription start site region 119881
Higd2a 13 54590231 to 54591147 916 + protein coding gene HIG1 domain family, member 2A
Tssr119882 13 54590753 to 54590769 16 + TSS region transcription start site region 119882
Cltb 13 54592939 to 54611405 18466 - protein coding gene clathrin, light polypeptide (Lcb)
Tssr122617 13 54593998 to 54594009 11 - TSS region transcription start site region 122617
Cpgi5643 13 54598801 to 54599294 493 CpG island CpG island 5643
Tssr122618 13 54598830 to 54598841 11 - TSS region transcription start site region 122618
Tssr122619 13 54607097 to 54607114 17 - TSS region transcription start site region 122619
Cpgi5644 13 54610512 to 54611868 1356 CpG island CpG island 5644
Tssr122620 13 54611274 to 54611297 23 - TSS region transcription start site region 122620
Tssr122621 13 54611309 to 54611326 17 - TSS region transcription start site region 122621
Tssr122622 13 54611332 to 54611387 55 - TSS region transcription start site region 122622
Tssr122623 13 54611527 to 54611540 13 - TSS region transcription start site region 122623
Cpgi5645 13 54621537 to 54622437 900 CpG island CpG island 5645
Tssr119883 13 54621780 to 54621793 13 + TSS region transcription start site region 119883
Faf2 13 54621784 to 54664063 42279 + protein coding gene Fas associated factor family member 2
Tssr119884 13 54621801 to 54621841 40 + TSS region transcription start site region 119884
Tssr119885 13 54633297 to 54633301 4 + TSS region transcription start site region 119885
D13Mit96 13 54655739 to 54655845 106 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96
D13Mit96.1 13 54655814 to 54656022 208 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96.1
Rn4.5s-ps3 13 54656909 to 54657002 93 - pseudogene 4.5s RNA, pseudogene 3
Rnf44 13 54679399 to 54693907 14508 - protein coding gene ring finger protein 44
Tssr122624 13 54683157 to 54683185 28 - TSS region transcription start site region 122624
Tssr122625 13 54683687 to 54683719 32 - TSS region transcription start site region 122625
Tssr122626 13 54684082 to 54684114 32 - TSS region transcription start site region 122626
Cpgi5646 13 54686862 to 54688425 1563 CpG island CpG island 5646
Tssr122627 13 54687216 to 54687232 16 - TSS region transcription start site region 122627
Tssr119886 13 54687309 to 54687323 14 + TSS region transcription start site region 119886
Tssr122628 13 54687623 to 54687643 20 - TSS region transcription start site region 122628
Tssr122629 13 54687644 to 54687688 44 - TSS region transcription start site region 122629
Tssr122630 13 54687696 to 54687809 113 - TSS region transcription start site region 122630
Tssr119887 13 54687872 to 54687887 15 + TSS region transcription start site region 119887
Tssr119888 13 54687933 to 54687955 22 + TSS region transcription start site region 119888
Tssr122631 13 54688065 to 54688093 28 - TSS region transcription start site region 122631
Tssr122632 13 54688099 to 54688145 46 - TSS region transcription start site region 122632
Tssr122633 13 54688184 to 54688211 27 - TSS region transcription start site region 122633
Tssr122634 13 54688246 to 54688263 17 - TSS region transcription start site region 122634
Tssr122635 13 54688264 to 54688284 20 - TSS region transcription start site region 122635
Tssr122636 13 54691786 to 54691793 7 - TSS region transcription start site region 122636
Cpgi5647 13 54693345 to 54694710 1365 CpG island CpG island 5647
Tssr122637 13 54693794 to 54693888 94 - TSS region transcription start site region 122637
Tssr119889 13 54701435 to 54701446 11 + TSS region transcription start site region 119889
Tssr119890 13 54701457 to 54701479 22 + TSS region transcription start site region 119890
Cdhr2 13 54701463 to 54736662 35199 + protein coding gene cadherin-related family member 2
Tssr119891 13 54717608 to 54717617 9 + TSS region transcription start site region 119891
Tssr119892 13 54718560 to 54718572 12 + TSS region transcription start site region 119892
Tssr119893 13 54720145 to 54720161 16 + TSS region transcription start site region 119893
Tssr119894 13 54726791 to 54726802 11 + TSS region transcription start site region 119894
Tssr119895 13 54730243 to 54730246 3 + TSS region transcription start site region 119895
Tssr119896 13 54731718 to 54731728 10 + TSS region transcription start site region 119896
Tssr119897 13 54731775 to 54731790 15 + TSS region transcription start site region 119897
Tssr4074 13 54731819 to 54731828 9 + TSS region transcription start site region 4074
Tssr119898 13 54732029 to 54732053 24 + TSS region transcription start site region 119898
Gprin1 13 54736671 to 54749874 13203 - protein coding gene G protein-regulated inducer of neurite outgrowth 1
Cpgi5648 13 54737122 to 54738998 1876 CpG island CpG island 5648
9530001D17Rik 13 54741951 to 54742331 380 unclassified gene RIKEN cDNA 9530001D17 gene
Cpgi5649 13 54748861 to 54750295 1434 CpG island CpG island 5649
Tssr122638 13 54749613 to 54749625 12 - TSS region transcription start site region 122638
Tssr122639 13 54749627 to 54749697 70 - TSS region transcription start site region 122639
Tssr122640 13 54749849 to 54749893 44 - TSS region transcription start site region 122640
Tssr122641 13 54749908 to 54749920 12 - TSS region transcription start site region 122641
Cpgi5650 13 54757950 to 54759033 1083 CpG island CpG island 5650
Sncb 13 54758860 to 54766595 7735 - protein coding gene synuclein, beta
Tssr122642 13 54759208 to 54759218 10 - TSS region transcription start site region 122642
Tssr122643 13 54759305 to 54759313 8 - TSS region transcription start site region 122643
Tssr122644 13 54759374 to 54759403 29 - TSS region transcription start site region 122644
Tssr122645 13 54759433 to 54759441 8 - TSS region transcription start site region 122645
Tssr122646 13 54759507 to 54759518 11 - TSS region transcription start site region 122646
Tssr122647 13 54759917 to 54759955 38 - TSS region transcription start site region 122647
Tssr122648 13 54762695 to 54762709 14 - TSS region transcription start site region 122648
Tssr122649 13 54762713 to 54762729 16 - TSS region transcription start site region 122649
Tssr122650 13 54762948 to 54762971 23 - TSS region transcription start site region 122650
Tssr122651 13 54765593 to 54765615 22 - TSS region transcription start site region 122651
Tssr122652 13 54765629 to 54765648 19 - TSS region transcription start site region 122652
Cpgi5651 13 54765636 to 54766710 1074 CpG island CpG island 5651
Tssr122653 13 54765704 to 54765720 16 - TSS region transcription start site region 122653
Tssr122654 13 54765848 to 54765907 59 - TSS region transcription start site region 122654
Tssr122655 13 54766500 to 54766503 3 - TSS region transcription start site region 122655
Tssr122656 13 54766553 to 54766572 19 - TSS region transcription start site region 122656
Gm16249 13 54777514 to 54783091 5577 - antisense lncRNA gene predicted gene 16249
Tssr119899 13 54783988 to 54783993 5 + TSS region transcription start site region 119899
Eif4e1b 13 54783998 to 54788459 4461 + protein coding gene eukaryotic translation initiation factor 4E family member 1B
Cpgi5652 13 54788997 to 54790131 1134 CpG island CpG island 5652
Tspan17 13 54789377 to 54796776 7399 + protein coding gene tetraspanin 17
Tssr119900 13 54789426 to 54789497 71 + TSS region transcription start site region 119900
Tssr119901 13 54789500 to 54789509 9 + TSS region transcription start site region 119901
Tssr119902 13 54789984 to 54789989 5 + TSS region transcription start site region 119902
Gm16250 13 54840649 to 54840904 255 - pseudogene predicted gene 16250
Gm40959 13 54858135 to 54874869 16734 - lncRNA gene predicted gene, 40959
Cpgi5653 13 54874599 to 54875063 464 CpG island CpG island 5653
Gm31188 13 54876135 to 54878598 2463 + lncRNA gene predicted gene, 31188
Tssr119903 13 54876160 to 54876185 25 + TSS region transcription start site region 119903
Gm29431 13 54887470 to 54888013 543 + lincRNA gene predicted gene 29431
Tssr119904 13 54913226 to 54913227 1 + TSS region transcription start site region 119904
Tssr119905 13 54913229 to 54913240 11 + TSS region transcription start site region 119905
5330429C05Rik 13 54913235 to 54914479 1244 + lincRNA gene RIKEN cDNA 5330429C05 gene
Tssr119906 13 54913249 to 54913250 1 + TSS region transcription start site region 119906
4930526F13Rik 13 54927748 to 54930753 3005 - lincRNA gene RIKEN cDNA 4930526F13 gene
Tssr122657 13 54930199 to 54930213 14 - TSS region transcription start site region 122657
Tssr122658 13 54930229 to 54930246 17 - TSS region transcription start site region 122658
Tssr122659 13 54930257 to 54930265 8 - TSS region transcription start site region 122659
Gm31313 13 54933420 to 54949336 15916 - lncRNA gene predicted gene, 31313
Cpgi5654 13 54948427 to 54950370 1943 CpG island CpG island 5654
Tssr119907 13 54949363 to 54949386 23 + TSS region transcription start site region 119907
Tssr119908 13 54949388 to 54949481 93 + TSS region transcription start site region 119908
Unc5a 13 54949411 to 55006018 56607 + protein coding gene unc-5 netrin receptor A
Cpgi5655 13 54955579 to 54956589 1010 CpG island CpG island 5655
Tssr4075 13 54991434 to 54991435 1 + TSS region transcription start site region 4075
Tssr119909 13 55003213 to 55003228 15 + TSS region transcription start site region 119909
Tssr119910 13 55005985 to 55006015 30 + TSS region transcription start site region 119910
Hk3 13 55005985 to 55021385 15400 - protein coding gene hexokinase 3
Tssr122660 13 55006919 to 55006928 9 - TSS region transcription start site region 122660
Tssr119911 13 55016784 to 55016801 17 + TSS region transcription start site region 119911
Tssr122661 13 55018097 to 55018108 11 - TSS region transcription start site region 122661
Tssr122662 13 55018197 to 55018208 11 - TSS region transcription start site region 122662
Tssr122663 13 55018369 to 55018382 13 - TSS region transcription start site region 122663