MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 13:53755740-54075749

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm34439	13	53748391 to 53787724	39333	-	lncRNA gene	predicted gene, 34439
Gm48548	13	53776627 to 53778973	2346	+	lincRNA gene	predicted gene, 48548
Cpgi5628	13	53800765 to 53801030	265		CpG island	CpG island 5628
Gm40954	13	53839281 to 53850088	10807	-	lncRNA gene	predicted gene, 40954
Gm18974	13	53888534 to 53889117	583	+	pseudogene	predicted gene, 18974
E130119H09Rik	13	53912263 to 53915748	3485	-	unclassified non-coding RNA gene	RIKEN cDNA E130119H09 gene
Tssr122594	13	53915740 to 53915749	9	-	TSS region	transcription start site region 122594
Gm34557	13	53932983 to 53935283	2300	-	lincRNA gene	predicted gene, 34557
Gm48550	13	53968944 to 53976666	7722	+	lincRNA gene	predicted gene, 48550
Drd1	13	54051183 to 54055658	4475	-	protein coding gene	dopamine receptor D1
Cpgi5629	13	54055010 to 54055905	895		CpG island	CpG island 5629
Tssr122595	13	54055088 to 54055118	30	-	TSS region	transcription start site region 122595
Tssr122596	13	54055650 to 54055680	30	-	TSS region	transcription start site region 122596
Cpgi5630	13	54071655 to 54072713	1058		CpG island	CpG island 5630
Tssr119836	13	54071815 to 54071859	44	+	TSS region	transcription start site region 119836
Tssr119837	13	54071860 to 54071909	49	+	TSS region	transcription start site region 119837
Sfxn1	13	54071869 to 54108342	36473	+	protein coding gene	sideroflexin 1
Tssr122597	13	54072591 to 54072599	8	-	TSS region	transcription start site region 122597
Tssr119838	13	54073729 to 54073740	11	+	TSS region	transcription start site region 119838