Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:53570740-54260749

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
9530014B07Rik 13 53635894 to 53639193 3299 - lincRNA gene RIKEN cDNA 9530014B07 gene
Tssr122591 13 53639187 to 53639202 15 - TSS region transcription start site region 122591
Tssr122592 13 53639207 to 53639212 5 - TSS region transcription start site region 122592
Tssr122593 13 53639225 to 53639236 11 - TSS region transcription start site region 122593
Cpgi5626 13 53648441 to 53648669 228 CpG island CpG island 5626
4930555G21Rik 13 53648585 to 53650080 1495 + lincRNA gene RIKEN cDNA 4930555G21 gene
Cpgi5627 13 53670427 to 53670844 417 CpG island CpG island 5627
Gm34278 13 53682556 to 53700474 17918 - lincRNA gene predicted gene, 34278
Gm34332 13 53688767 to 53690351 1584 + lncRNA gene predicted gene, 34332
Gm34439 13 53748391 to 53787724 39333 - lncRNA gene predicted gene, 34439
Gm48548 13 53776627 to 53778973 2346 + lincRNA gene predicted gene, 48548
Cpgi5628 13 53800765 to 53801030 265 CpG island CpG island 5628
Gm40954 13 53839281 to 53850088 10807 - lncRNA gene predicted gene, 40954
Gm18974 13 53888534 to 53889117 583 + pseudogene predicted gene, 18974
E130119H09Rik 13 53912263 to 53915748 3485 - unclassified non-coding RNA gene RIKEN cDNA E130119H09 gene
Tssr122594 13 53915740 to 53915749 9 - TSS region transcription start site region 122594
Gm34557 13 53932983 to 53935283 2300 - lincRNA gene predicted gene, 34557
Gm48550 13 53968944 to 53976666 7722 + lincRNA gene predicted gene, 48550
Drd1 13 54051183 to 54055658 4475 - protein coding gene dopamine receptor D1
Cpgi5629 13 54055010 to 54055905 895 CpG island CpG island 5629
Tssr122595 13 54055088 to 54055118 30 - TSS region transcription start site region 122595
Tssr122596 13 54055650 to 54055680 30 - TSS region transcription start site region 122596
Cpgi5630 13 54071655 to 54072713 1058 CpG island CpG island 5630
Tssr119836 13 54071815 to 54071859 44 + TSS region transcription start site region 119836
Tssr119837 13 54071860 to 54071909 49 + TSS region transcription start site region 119837
Sfxn1 13 54071869 to 54108342 36473 + protein coding gene sideroflexin 1
Tssr122597 13 54072591 to 54072599 8 - TSS region transcription start site region 122597
Tssr119838 13 54073729 to 54073740 11 + TSS region transcription start site region 119838
Tssr122598 13 54106745 to 54106767 22 - TSS region transcription start site region 122598
Tssr119839 13 54106802 to 54106822 20 + TSS region transcription start site region 119839
Tssr119840 13 54107203 to 54107205 2 + TSS region transcription start site region 119840
Gm18473 13 54140933 to 54141798 865 + pseudogene predicted gene, 18473
Gm34640 13 54177791 to 54181769 3978 - lncRNA gene predicted gene, 34640
Tssr122599 13 54189976 to 54190008 32 - TSS region transcription start site region 122599
Tssr122600 13 54190049 to 54190063 14 - TSS region transcription start site region 122600
Tssr122601 13 54190172 to 54190187 15 - TSS region transcription start site region 122601
Cpgi5631 13 54191961 to 54192508 547 CpG island CpG island 5631
Tssr119841 13 54192106 to 54192151 45 + TSS region transcription start site region 119841
Hrh2 13 54192129 to 54236180 44051 + protein coding gene histamine receptor H2
Tssr119842 13 54209630 to 54209650 20 + TSS region transcription start site region 119842
Gm16578 13 54219453 to 54223023 3570 - antisense lncRNA gene predicted gene 16578
Tssr122602 13 54219951 to 54219962 11 - TSS region transcription start site region 122602
Gm48615 13 54245296 to 54245584 288 + lincRNA gene predicted gene, 48615