Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:53448944-54496666

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm2762 13 53393689 to 53455630 61941 + lincRNA gene predicted gene 2762
Gm33763 13 53461317 to 53478244 16927 + lncRNA gene predicted gene, 33763
Cpgi5621 13 53461903 to 53462789 886 CpG island CpG island 5621
Cpgi5622 13 53465273 to 53465814 541 CpG island CpG island 5622
Msx2 13 53466881 to 53472780 5899 - protein coding gene msh homeobox 2
Cpgi5623 13 53472121 to 53473156 1035 CpG island CpG island 5623
Tssr122586 13 53472712 to 53472725 13 - TSS region transcription start site region 122586
Tssr122587 13 53472735 to 53472787 52 - TSS region transcription start site region 122587
Tssr122588 13 53472800 to 53472810 10 - TSS region transcription start site region 122588
Tssr122589 13 53472822 to 53472850 28 - TSS region transcription start site region 122589
Cpgi5624 13 53475606 to 53476448 842 CpG island CpG island 5624
Gm40951 13 53478351 to 53481973 3622 + lncRNA gene predicted gene, 40951
Gm33873 13 53482624 to 53505790 23166 + lncRNA gene predicted gene, 33873
Gm40952 13 53501857 to 53504386 2529 - lncRNA gene predicted gene, 40952
Cpgi5625 13 53504744 to 53505143 399 CpG island CpG island 5625
Gm34022 13 53506535 to 53534643 28108 - lincRNA gene predicted gene, 34022
Gm5449 13 53525703 to 53526059 356 + pseudogene predicted pseudogene 5449
Tssr122590 13 53533239 to 53533286 47 - TSS region transcription start site region 122590
9530014B07Rik 13 53635894 to 53639193 3299 - lincRNA gene RIKEN cDNA 9530014B07 gene
Tssr122591 13 53639187 to 53639202 15 - TSS region transcription start site region 122591
Tssr122592 13 53639207 to 53639212 5 - TSS region transcription start site region 122592
Tssr122593 13 53639225 to 53639236 11 - TSS region transcription start site region 122593
Cpgi5626 13 53648441 to 53648669 228 CpG island CpG island 5626
4930555G21Rik 13 53648585 to 53650080 1495 + lincRNA gene RIKEN cDNA 4930555G21 gene
Cpgi5627 13 53670427 to 53670844 417 CpG island CpG island 5627
Gm34278 13 53682556 to 53700474 17918 - lincRNA gene predicted gene, 34278
Gm34332 13 53688767 to 53690351 1584 + lncRNA gene predicted gene, 34332
Gm34439 13 53748391 to 53787724 39333 - lncRNA gene predicted gene, 34439
Gm48548 13 53776627 to 53778973 2346 + lincRNA gene predicted gene, 48548
Cpgi5628 13 53800765 to 53801030 265 CpG island CpG island 5628
Gm40954 13 53839281 to 53850088 10807 - lncRNA gene predicted gene, 40954
Gm18974 13 53888534 to 53889117 583 + pseudogene predicted gene, 18974
E130119H09Rik 13 53912263 to 53915748 3485 - unclassified non-coding RNA gene RIKEN cDNA E130119H09 gene
Tssr122594 13 53915740 to 53915749 9 - TSS region transcription start site region 122594
Gm34557 13 53932983 to 53935283 2300 - lincRNA gene predicted gene, 34557
Gm48550 13 53968944 to 53976666 7722 + lincRNA gene predicted gene, 48550
Drd1 13 54051183 to 54055658 4475 - protein coding gene dopamine receptor D1
Cpgi5629 13 54055010 to 54055905 895 CpG island CpG island 5629
Tssr122595 13 54055088 to 54055118 30 - TSS region transcription start site region 122595
Tssr122596 13 54055650 to 54055680 30 - TSS region transcription start site region 122596
Cpgi5630 13 54071655 to 54072713 1058 CpG island CpG island 5630
Tssr119836 13 54071815 to 54071859 44 + TSS region transcription start site region 119836
Tssr119837 13 54071860 to 54071909 49 + TSS region transcription start site region 119837
Sfxn1 13 54071869 to 54108342 36473 + protein coding gene sideroflexin 1
Tssr122597 13 54072591 to 54072599 8 - TSS region transcription start site region 122597
Tssr119838 13 54073729 to 54073740 11 + TSS region transcription start site region 119838
Tssr122598 13 54106745 to 54106767 22 - TSS region transcription start site region 122598
Tssr119839 13 54106802 to 54106822 20 + TSS region transcription start site region 119839
Tssr119840 13 54107203 to 54107205 2 + TSS region transcription start site region 119840
Gm18473 13 54140933 to 54141798 865 + pseudogene predicted gene, 18473
Gm34640 13 54177791 to 54181769 3978 - lncRNA gene predicted gene, 34640
Tssr122599 13 54189976 to 54190008 32 - TSS region transcription start site region 122599
Tssr122600 13 54190049 to 54190063 14 - TSS region transcription start site region 122600
Tssr122601 13 54190172 to 54190187 15 - TSS region transcription start site region 122601
Cpgi5631 13 54191961 to 54192508 547 CpG island CpG island 5631
Tssr119841 13 54192106 to 54192151 45 + TSS region transcription start site region 119841
Hrh2 13 54192129 to 54236180 44051 + protein coding gene histamine receptor H2
Tssr119842 13 54209630 to 54209650 20 + TSS region transcription start site region 119842
Gm16578 13 54219453 to 54223023 3570 - antisense lncRNA gene predicted gene 16578
Tssr122602 13 54219951 to 54219962 11 - TSS region transcription start site region 122602
Gm48615 13 54245296 to 54245584 288 + lincRNA gene predicted gene, 48615
Cpgi5632 13 54282664 to 54282959 295 CpG island CpG island 5632
Gm40955 13 54283242 to 54289078 5836 + lncRNA gene predicted gene, 40955
Gm48623 13 54301959 to 54312797 10838 + lincRNA gene predicted gene, 48623
Cpgi5633 13 54302431 to 54303615 1184 CpG island CpG island 5633
Tssr119843 13 54302514 to 54302671 157 + TSS region transcription start site region 119843
Tssr119844 13 54302784 to 54302800 16 + TSS region transcription start site region 119844
Tssr122603 13 54303491 to 54303517 26 - TSS region transcription start site region 122603
Tssr119845 13 54304815 to 54304829 14 + TSS region transcription start site region 119845
Gm48622 13 54309905 to 54327880 17975 - lincRNA gene predicted gene, 48622
D13Mit297 13 54326741 to 54326871 130 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-297
Tssr119846 13 54336029 to 54336033 4 + TSS region transcription start site region 119846
Tssr119847 13 54346641 to 54346645 4 + TSS region transcription start site region 119847
Tssr119848 13 54366436 to 54366437 1 + TSS region transcription start site region 119848
Tssr119849 13 54371340 to 54371352 12 + TSS region transcription start site region 119849
Cpgi5634 13 54371342 to 54372083 741 CpG island CpG island 5634
Cplx2 13 54371349 to 54383917 12568 + protein coding gene complexin 2
Tssr119850 13 54371356 to 54371387 31 + TSS region transcription start site region 119850
Tssr119851 13 54371423 to 54371428 5 + TSS region transcription start site region 119851
Tssr119852 13 54371441 to 54371466 25 + TSS region transcription start site region 119852
Tssr119853 13 54371467 to 54371498 31 + TSS region transcription start site region 119853
Tssr119854 13 54371500 to 54371516 16 + TSS region transcription start site region 119854
Tssr119855 13 54371527 to 54371532 5 + TSS region transcription start site region 119855
Cpgi5635 13 54372761 to 54373049 288 CpG island CpG island 5635
Tssr119856 13 54378579 to 54378590 11 + TSS region transcription start site region 119856
Cpgi5636 13 54378739 to 54379255 516 CpG island CpG island 5636
Tssr122604 13 54378913 to 54378941 28 - TSS region transcription start site region 122604
Tssr122605 13 54379539 to 54379578 39 - TSS region transcription start site region 122605
Tssr119857 13 54379758 to 54379776 18 + TSS region transcription start site region 119857
Tssr119858 13 54379818 to 54379829 11 + TSS region transcription start site region 119858
Tssr122606 13 54380218 to 54380227 9 - TSS region transcription start site region 122606
Tssr119859 13 54380286 to 54380303 17 + TSS region transcription start site region 119859
Tssr119860 13 54380594 to 54380610 16 + TSS region transcription start site region 119860
Tssr119861 13 54381774 to 54381786 12 + TSS region transcription start site region 119861
Tssr119862 13 54382084 to 54382095 11 + TSS region transcription start site region 119862
Tssr119863 13 54382535 to 54382552 17 + TSS region transcription start site region 119863
Tssr119864 13 54382568 to 54382583 15 + TSS region transcription start site region 119864
Tssr119865 13 54382642 to 54382653 11 + TSS region transcription start site region 119865
Tssr119866 13 54382667 to 54382686 19 + TSS region transcription start site region 119866
Tssr119867 13 54382733 to 54382752 19 + TSS region transcription start site region 119867
Tssr119868 13 54382763 to 54382783 20 + TSS region transcription start site region 119868
Tssr119869 13 54382793 to 54382866 73 + TSS region transcription start site region 119869
Gm16248 13 54399092 to 54399334 242 - lincRNA gene predicted gene 16248
Tssr122607 13 54399246 to 54399251 5 - TSS region transcription start site region 122607
Tssr122608 13 54412367 to 54412389 22 - TSS region transcription start site region 122608
Gm22668 13 54429441 to 54429700 259 - unclassified non-coding RNA gene predicted gene, 22668
Thoc3 13 54458837 to 54468840 10003 - protein coding gene THO complex 3
Cpgi5637 13 54468255 to 54469015 760 CpG island CpG island 5637
Tssr122609 13 54468805 to 54468862 57 - TSS region transcription start site region 122609
D13Mit54 13 54478184 to 54478304 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 54
Cpgi5638 13 54481397 to 54481611 214 CpG island CpG island 5638