Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:53353830-55843841

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513 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tesq1 13 20431342 to 55572704 35141362 QTL testis weight QTL 1
Sptlc1 13 53332748 to 53377397 44649 - protein coding gene serine palmitoyltransferase, long chain base subunit 1
Tssr122579 13 53369775 to 53369779 4 - TSS region transcription start site region 122579
Tssr122580 13 53370257 to 53370266 9 - TSS region transcription start site region 122580
Tssr122581 13 53373778 to 53373785 7 - TSS region transcription start site region 122581
Tssr122582 13 53374307 to 53374319 12 - TSS region transcription start site region 122582
Cpgi5620 13 53377045 to 53377579 534 CpG island CpG island 5620
Tssr122583 13 53377355 to 53377373 18 - TSS region transcription start site region 122583
Tssr119832 13 53393589 to 53393678 89 + TSS region transcription start site region 119832
Tssr119833 13 53393682 to 53393694 12 + TSS region transcription start site region 119833
Gm2762 13 53393689 to 53455630 61941 + lincRNA gene predicted gene 2762
1700058M13Rik 13 53403949 to 53414829 10880 lncRNA gene RIKEN cDNA 1700058M13 gene
Gm43262 13 53403950 to 53414830 10880 - lincRNA gene predicted gene 43262
Tssr122584 13 53414821 to 53414832 11 - TSS region transcription start site region 122584
Gm38564 13 53415943 to 53419345 3402 - protein coding gene predicted gene, 38564
Tssr122585 13 53421644 to 53421662 18 - TSS region transcription start site region 122585
Tssr119834 13 53441907 to 53441912 5 + TSS region transcription start site region 119834
Tssr119835 13 53448251 to 53448257 6 + TSS region transcription start site region 119835
Gm33763 13 53461317 to 53478244 16927 + lncRNA gene predicted gene, 33763
Cpgi5621 13 53461903 to 53462789 886 CpG island CpG island 5621
Cpgi5622 13 53465273 to 53465814 541 CpG island CpG island 5622
Msx2 13 53466881 to 53472780 5899 - protein coding gene msh homeobox 2
Cpgi5623 13 53472121 to 53473156 1035 CpG island CpG island 5623
Tssr122586 13 53472712 to 53472725 13 - TSS region transcription start site region 122586
Tssr122587 13 53472735 to 53472787 52 - TSS region transcription start site region 122587
Tssr122588 13 53472800 to 53472810 10 - TSS region transcription start site region 122588
Tssr122589 13 53472822 to 53472850 28 - TSS region transcription start site region 122589
Cpgi5624 13 53475606 to 53476448 842 CpG island CpG island 5624
Gm40951 13 53478351 to 53481973 3622 + lncRNA gene predicted gene, 40951
Gm33873 13 53482624 to 53505790 23166 + lncRNA gene predicted gene, 33873
Gm40952 13 53501857 to 53504386 2529 - lncRNA gene predicted gene, 40952
Cpgi5625 13 53504744 to 53505143 399 CpG island CpG island 5625
Gm34022 13 53506535 to 53534643 28108 - lincRNA gene predicted gene, 34022
Gm5449 13 53525703 to 53526059 356 + pseudogene predicted pseudogene 5449
Tssr122590 13 53533239 to 53533286 47 - TSS region transcription start site region 122590
9530014B07Rik 13 53635894 to 53639193 3299 - lincRNA gene RIKEN cDNA 9530014B07 gene
Tssr122591 13 53639187 to 53639202 15 - TSS region transcription start site region 122591
Tssr122592 13 53639207 to 53639212 5 - TSS region transcription start site region 122592
Tssr122593 13 53639225 to 53639236 11 - TSS region transcription start site region 122593
Cpgi5626 13 53648441 to 53648669 228 CpG island CpG island 5626
4930555G21Rik 13 53648585 to 53650080 1495 + lincRNA gene RIKEN cDNA 4930555G21 gene
Cpgi5627 13 53670427 to 53670844 417 CpG island CpG island 5627
Gm34278 13 53682556 to 53700474 17918 - lincRNA gene predicted gene, 34278
Gm34332 13 53688767 to 53690351 1584 + lncRNA gene predicted gene, 34332
Gm34439 13 53748391 to 53787724 39333 - lncRNA gene predicted gene, 34439
Gm48548 13 53776627 to 53778973 2346 + lincRNA gene predicted gene, 48548
Cpgi5628 13 53800765 to 53801030 265 CpG island CpG island 5628
Gm40954 13 53839281 to 53850088 10807 - lncRNA gene predicted gene, 40954
Gm18974 13 53888534 to 53889117 583 + pseudogene predicted gene, 18974
E130119H09Rik 13 53912263 to 53915748 3485 - unclassified non-coding RNA gene RIKEN cDNA E130119H09 gene
Tssr122594 13 53915740 to 53915749 9 - TSS region transcription start site region 122594
Gm34557 13 53932983 to 53935283 2300 - lincRNA gene predicted gene, 34557
Gm48550 13 53968944 to 53976666 7722 + lincRNA gene predicted gene, 48550
Drd1 13 54051183 to 54055658 4475 - protein coding gene dopamine receptor D1
Cpgi5629 13 54055010 to 54055905 895 CpG island CpG island 5629
Tssr122595 13 54055088 to 54055118 30 - TSS region transcription start site region 122595
Tssr122596 13 54055650 to 54055680 30 - TSS region transcription start site region 122596
Cpgi5630 13 54071655 to 54072713 1058 CpG island CpG island 5630
Tssr119836 13 54071815 to 54071859 44 + TSS region transcription start site region 119836
Tssr119837 13 54071860 to 54071909 49 + TSS region transcription start site region 119837
Sfxn1 13 54071869 to 54108342 36473 + protein coding gene sideroflexin 1
Tssr122597 13 54072591 to 54072599 8 - TSS region transcription start site region 122597
Tssr119838 13 54073729 to 54073740 11 + TSS region transcription start site region 119838
Tssr122598 13 54106745 to 54106767 22 - TSS region transcription start site region 122598
Tssr119839 13 54106802 to 54106822 20 + TSS region transcription start site region 119839
Tssr119840 13 54107203 to 54107205 2 + TSS region transcription start site region 119840
Gm18473 13 54140933 to 54141798 865 + pseudogene predicted gene, 18473
Gm34640 13 54177791 to 54181769 3978 - lncRNA gene predicted gene, 34640
Tssr122599 13 54189976 to 54190008 32 - TSS region transcription start site region 122599
Tssr122600 13 54190049 to 54190063 14 - TSS region transcription start site region 122600
Tssr122601 13 54190172 to 54190187 15 - TSS region transcription start site region 122601
Cpgi5631 13 54191961 to 54192508 547 CpG island CpG island 5631
Tssr119841 13 54192106 to 54192151 45 + TSS region transcription start site region 119841
Hrh2 13 54192129 to 54236180 44051 + protein coding gene histamine receptor H2
Tssr119842 13 54209630 to 54209650 20 + TSS region transcription start site region 119842
Gm16578 13 54219453 to 54223023 3570 - antisense lncRNA gene predicted gene 16578
Tssr122602 13 54219951 to 54219962 11 - TSS region transcription start site region 122602
Gm48615 13 54245296 to 54245584 288 + lincRNA gene predicted gene, 48615
Cpgi5632 13 54282664 to 54282959 295 CpG island CpG island 5632
Gm40955 13 54283242 to 54289078 5836 + lncRNA gene predicted gene, 40955
Gm48623 13 54301959 to 54312797 10838 + lincRNA gene predicted gene, 48623
Cpgi5633 13 54302431 to 54303615 1184 CpG island CpG island 5633
Tssr119843 13 54302514 to 54302671 157 + TSS region transcription start site region 119843
Tssr119844 13 54302784 to 54302800 16 + TSS region transcription start site region 119844
Tssr122603 13 54303491 to 54303517 26 - TSS region transcription start site region 122603
Tssr119845 13 54304815 to 54304829 14 + TSS region transcription start site region 119845
Gm48622 13 54309905 to 54327880 17975 - lincRNA gene predicted gene, 48622
D13Mit297 13 54326741 to 54326871 130 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-297
Tssr119846 13 54336029 to 54336033 4 + TSS region transcription start site region 119846
Tssr119847 13 54346641 to 54346645 4 + TSS region transcription start site region 119847
Tssr119848 13 54366436 to 54366437 1 + TSS region transcription start site region 119848
Tssr119849 13 54371340 to 54371352 12 + TSS region transcription start site region 119849
Cpgi5634 13 54371342 to 54372083 741 CpG island CpG island 5634
Cplx2 13 54371349 to 54383917 12568 + protein coding gene complexin 2
Tssr119850 13 54371356 to 54371387 31 + TSS region transcription start site region 119850
Tssr119851 13 54371423 to 54371428 5 + TSS region transcription start site region 119851
Tssr119852 13 54371441 to 54371466 25 + TSS region transcription start site region 119852
Tssr119853 13 54371467 to 54371498 31 + TSS region transcription start site region 119853
Tssr119854 13 54371500 to 54371516 16 + TSS region transcription start site region 119854
Tssr119855 13 54371527 to 54371532 5 + TSS region transcription start site region 119855
Cpgi5635 13 54372761 to 54373049 288 CpG island CpG island 5635
Tssr119856 13 54378579 to 54378590 11 + TSS region transcription start site region 119856
Cpgi5636 13 54378739 to 54379255 516 CpG island CpG island 5636
Tssr122604 13 54378913 to 54378941 28 - TSS region transcription start site region 122604
Tssr122605 13 54379539 to 54379578 39 - TSS region transcription start site region 122605
Tssr119857 13 54379758 to 54379776 18 + TSS region transcription start site region 119857
Tssr119858 13 54379818 to 54379829 11 + TSS region transcription start site region 119858
Tssr122606 13 54380218 to 54380227 9 - TSS region transcription start site region 122606
Tssr119859 13 54380286 to 54380303 17 + TSS region transcription start site region 119859
Tssr119860 13 54380594 to 54380610 16 + TSS region transcription start site region 119860
Tssr119861 13 54381774 to 54381786 12 + TSS region transcription start site region 119861
Tssr119862 13 54382084 to 54382095 11 + TSS region transcription start site region 119862
Tssr119863 13 54382535 to 54382552 17 + TSS region transcription start site region 119863
Tssr119864 13 54382568 to 54382583 15 + TSS region transcription start site region 119864
Tssr119865 13 54382642 to 54382653 11 + TSS region transcription start site region 119865
Tssr119866 13 54382667 to 54382686 19 + TSS region transcription start site region 119866
Tssr119867 13 54382733 to 54382752 19 + TSS region transcription start site region 119867
Tssr119868 13 54382763 to 54382783 20 + TSS region transcription start site region 119868
Tssr119869 13 54382793 to 54382866 73 + TSS region transcription start site region 119869
Gm16248 13 54399092 to 54399334 242 - lincRNA gene predicted gene 16248
Tssr122607 13 54399246 to 54399251 5 - TSS region transcription start site region 122607
Tssr122608 13 54412367 to 54412389 22 - TSS region transcription start site region 122608
Gm22668 13 54429441 to 54429700 259 - unclassified non-coding RNA gene predicted gene, 22668
Thoc3 13 54458837 to 54468840 10003 - protein coding gene THO complex 3
Cpgi5637 13 54468255 to 54469015 760 CpG island CpG island 5637
Tssr122609 13 54468805 to 54468862 57 - TSS region transcription start site region 122609
D13Mit54 13 54478184 to 54478304 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 54
Cpgi5638 13 54481397 to 54481611 214 CpG island CpG island 5638
Gm2830 13 54499705 to 54500089 384 - pseudogene predicted gene 2830
Cpgi5639 13 54503257 to 54504575 1318 CpG island CpG island 5639
Tssr119870 13 54503762 to 54503769 7 + TSS region transcription start site region 119870
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Simc1 13 54503779 to 54551290 47511 + protein coding gene SUMO-interacting motifs containing 1
Tssr119871 13 54503786 to 54503800 14 + TSS region transcription start site region 119871
Tssr122610 13 54504309 to 54504326 17 - TSS region transcription start site region 122610
Tssr119872 13 54517504 to 54517508 4 + TSS region transcription start site region 119872
4833439L19Rik 13 54551218 to 54565382 14164 - protein coding gene RIKEN cDNA 4833439L19 gene
Tssr122611 13 54551907 to 54551939 32 - TSS region transcription start site region 122611
Cpgi5640 13 54564663 to 54565548 885 CpG island CpG island 5640
Tssr122612 13 54565299 to 54565362 63 - TSS region transcription start site region 122612
Tssr122613 13 54565368 to 54565386 18 - TSS region transcription start site region 122613
Tssr119873 13 54571020 to 54571069 49 + TSS region transcription start site region 119873
Cpgi5641 13 54574848 to 54575879 1031 CpG island CpG island 5641
Tssr119874 13 54575008 to 54575017 9 + TSS region transcription start site region 119874
Arl10 13 54575015 to 54581128 6113 + protein coding gene ADP-ribosylation factor-like 10
Tssr119875 13 54575020 to 54575093 73 + TSS region transcription start site region 119875
Tssr119876 13 54577902 to 54577918 16 + TSS region transcription start site region 119876
Gm24195 13 54578113 to 54578249 136 + miRNA gene predicted gene, 24195
Tssr119877 13 54581126 to 54581170 44 + TSS region transcription start site region 119877
Tssr119878 13 54581696 to 54581702 6 + TSS region transcription start site region 119878
Nop16 13 54584191 to 54590074 5883 - protein coding gene NOP16 nucleolar protein
Tssr122614 13 54589142 to 54589147 5 - TSS region transcription start site region 122614
Cpgi5642 13 54589620 to 54591081 1461 CpG island CpG island 5642
Tssr119879 13 54589926 to 54589952 26 + TSS region transcription start site region 119879
Tssr122615 13 54590013 to 54590034 21 - TSS region transcription start site region 122615
Tssr122616 13 54590047 to 54590089 42 - TSS region transcription start site region 122616
Tssr119880 13 54590204 to 54590218 14 + TSS region transcription start site region 119880
Tssr119881 13 54590221 to 54590267 46 + TSS region transcription start site region 119881
Higd2a 13 54590231 to 54591147 916 + protein coding gene HIG1 domain family, member 2A
Tssr119882 13 54590753 to 54590769 16 + TSS region transcription start site region 119882
Cltb 13 54592939 to 54611405 18466 - protein coding gene clathrin, light polypeptide (Lcb)
Tssr122617 13 54593998 to 54594009 11 - TSS region transcription start site region 122617
Cpgi5643 13 54598801 to 54599294 493 CpG island CpG island 5643
Tssr122618 13 54598830 to 54598841 11 - TSS region transcription start site region 122618
Tssr122619 13 54607097 to 54607114 17 - TSS region transcription start site region 122619
Cpgi5644 13 54610512 to 54611868 1356 CpG island CpG island 5644
Tssr122620 13 54611274 to 54611297 23 - TSS region transcription start site region 122620
Tssr122621 13 54611309 to 54611326 17 - TSS region transcription start site region 122621
Tssr122622 13 54611332 to 54611387 55 - TSS region transcription start site region 122622
Tssr122623 13 54611527 to 54611540 13 - TSS region transcription start site region 122623
Cpgi5645 13 54621537 to 54622437 900 CpG island CpG island 5645
Tssr119883 13 54621780 to 54621793 13 + TSS region transcription start site region 119883
Faf2 13 54621784 to 54664063 42279 + protein coding gene Fas associated factor family member 2
Tssr119884 13 54621801 to 54621841 40 + TSS region transcription start site region 119884
Tssr119885 13 54633297 to 54633301 4 + TSS region transcription start site region 119885
D13Mit96 13 54655739 to 54655845 106 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96
D13Mit96.1 13 54655814 to 54656022 208 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96.1
Rn4.5s-ps3 13 54656909 to 54657002 93 - pseudogene 4.5s RNA, pseudogene 3
Rnf44 13 54679399 to 54693907 14508 - protein coding gene ring finger protein 44
Tssr122624 13 54683157 to 54683185 28 - TSS region transcription start site region 122624
Tssr122625 13 54683687 to 54683719 32 - TSS region transcription start site region 122625
Tssr122626 13 54684082 to 54684114 32 - TSS region transcription start site region 122626
Cpgi5646 13 54686862 to 54688425 1563 CpG island CpG island 5646
Tssr122627 13 54687216 to 54687232 16 - TSS region transcription start site region 122627
Tssr119886 13 54687309 to 54687323 14 + TSS region transcription start site region 119886
Tssr122628 13 54687623 to 54687643 20 - TSS region transcription start site region 122628
Tssr122629 13 54687644 to 54687688 44 - TSS region transcription start site region 122629
Tssr122630 13 54687696 to 54687809 113 - TSS region transcription start site region 122630
Tssr119887 13 54687872 to 54687887 15 + TSS region transcription start site region 119887
Tssr119888 13 54687933 to 54687955 22 + TSS region transcription start site region 119888
Tssr122631 13 54688065 to 54688093 28 - TSS region transcription start site region 122631
Tssr122632 13 54688099 to 54688145 46 - TSS region transcription start site region 122632
Tssr122633 13 54688184 to 54688211 27 - TSS region transcription start site region 122633
Tssr122634 13 54688246 to 54688263 17 - TSS region transcription start site region 122634
Tssr122635 13 54688264 to 54688284 20 - TSS region transcription start site region 122635
Tssr122636 13 54691786 to 54691793 7 - TSS region transcription start site region 122636
Cpgi5647 13 54693345 to 54694710 1365 CpG island CpG island 5647
Tssr122637 13 54693794 to 54693888 94 - TSS region transcription start site region 122637
Tssr119889 13 54701435 to 54701446 11 + TSS region transcription start site region 119889
Tssr119890 13 54701457 to 54701479 22 + TSS region transcription start site region 119890