Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:52923057-53113426

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hpi1 13 4364026 to 52947604 48583578 QTL hapatic PMN infiltration 1
Auh 13 52835119 to 52929681 94562 - protein coding gene AU RNA binding protein/enoyl-coenzyme A hydratase
Cpgi5611 13 52929167 to 52929945 778 CpG island CpG island 5611
Tssr122564 13 52929484 to 52929497 13 - TSS region transcription start site region 122564
Tssr122565 13 52929618 to 52929629 11 - TSS region transcription start site region 122565
Tssr122566 13 52929640 to 52929678 38 - TSS region transcription start site region 122566
Acsns2 13 52947494 to 52947604 110 QTL Angiostrongylus costaricensis nematode susceptibility 2
Pfat3 13 52947494 to 52947604 110 QTL predicted fat percentage 3
D13Mit248 13 52947494 to 52947604 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 248
Gm40950 13 52954388 to 52967120 12732 + lncRNA gene predicted gene, 40950
n-R5s54 13 52964621 to 52964732 111 - rRNA gene nuclear encoded rRNA 5S 54
Nfil3 13 52967209 to 52981073 13864 - protein coding gene nuclear factor, interleukin 3, regulated
Tssr122567 13 52978159 to 52978169 10 - TSS region transcription start site region 122567
Cpgi5612 13 52978303 to 52978995 692 CpG island CpG island 5612
Tssr122568 13 52979838 to 52979844 6 - TSS region transcription start site region 122568
Cpgi5613 13 52980014 to 52982198 2184 CpG island CpG island 5613
Tssr122569 13 52981013 to 52981024 11 - TSS region transcription start site region 122569
Tssr122570 13 52981027 to 52981083 56 - TSS region transcription start site region 122570
Tssr119828 13 52981221 to 52981244 23 + TSS region transcription start site region 119828
Tssr122571 13 52981966 to 52981979 13 - TSS region transcription start site region 122571
Tssr122572 13 52982700 to 52982707 7 - TSS region transcription start site region 122572
Tssr122573 13 52982897 to 52982927 30 - TSS region transcription start site region 122573
Tssr119829 13 52985974 to 52985981 7 + TSS region transcription start site region 119829
D13Nds1 13 52990784 to 52990868 84 DNA segment DNA segment, Chr 13, Nuffield Department of Surgery 1
Heal7 13 52990784 to 52990868 84 QTL wound healing/regeneration 7
Tssr119830 13 53001861 to 53001870 9 + TSS region transcription start site region 119830
Gm33519 13 53008090 to 53018019 9929 - lncRNA gene predicted gene, 33519
Gm33424 13 53016202 to 53018185 1983 + lincRNA gene predicted gene, 33424
Oit4 13 53018057 to 53018426 369 unclassified gene oncoprotein induced transcript 4
Gm48336 13 53028918 to 53035090 6172 + lincRNA gene predicted gene, 48336
Cpgi5614 13 53049308 to 53049740 432 CpG island CpG island 5614
Ror2 13 53109317 to 53286109 176792 - protein coding gene receptor tyrosine kinase-like orphan receptor 2
Cpgi5615 13 53110234 to 53110615 381 CpG island CpG island 5615
Cpgi5616 13 53111021 to 53111564 543 CpG island CpG island 5616