Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:52680943-54154345

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hpi1 13 4364026 to 52947604 48583578 QTL hapatic PMN infiltration 1
BB123696 13 52729615 to 52757205 27590 - lincRNA gene expressed sequence BB123696
Tssr122561 13 52735592 to 52735612 20 - TSS region transcription start site region 122561
D13Mit249 13 52752300 to 52752398 98 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 249
Cpgi5610 13 52793542 to 52793725 183 CpG island CpG island 5610
Tssr122562 13 52820243 to 52820255 12 - TSS region transcription start site region 122562
Gm33315 13 52828125 to 52845595 17470 + lncRNA gene predicted gene, 33315
Auh 13 52835119 to 52929681 94562 - protein coding gene AU RNA binding protein/enoyl-coenzyme A hydratase
Tssr122563 13 52843432 to 52843433 1 - TSS region transcription start site region 122563
D13Mit140 13 52872415 to 52872520 105 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 140
Cpgi5611 13 52929167 to 52929945 778 CpG island CpG island 5611
Tssr122564 13 52929484 to 52929497 13 - TSS region transcription start site region 122564
Tssr122565 13 52929618 to 52929629 11 - TSS region transcription start site region 122565
Tssr122566 13 52929640 to 52929678 38 - TSS region transcription start site region 122566
Pfat3 13 52947494 to 52947604 110 QTL predicted fat percentage 3
D13Mit248 13 52947494 to 52947604 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 248
Acsns2 13 52947494 to 52947604 110 QTL Angiostrongylus costaricensis nematode susceptibility 2
Gm40950 13 52954388 to 52967120 12732 + lncRNA gene predicted gene, 40950
n-R5s54 13 52964621 to 52964732 111 - rRNA gene nuclear encoded rRNA 5S 54
Nfil3 13 52967209 to 52981073 13864 - protein coding gene nuclear factor, interleukin 3, regulated
Tssr122567 13 52978159 to 52978169 10 - TSS region transcription start site region 122567
Cpgi5612 13 52978303 to 52978995 692 CpG island CpG island 5612
Tssr122568 13 52979838 to 52979844 6 - TSS region transcription start site region 122568
Cpgi5613 13 52980014 to 52982198 2184 CpG island CpG island 5613
Tssr122569 13 52981013 to 52981024 11 - TSS region transcription start site region 122569
Tssr122570 13 52981027 to 52981083 56 - TSS region transcription start site region 122570
Tssr119828 13 52981221 to 52981244 23 + TSS region transcription start site region 119828
Tssr122571 13 52981966 to 52981979 13 - TSS region transcription start site region 122571
Tssr122572 13 52982700 to 52982707 7 - TSS region transcription start site region 122572
Tssr122573 13 52982897 to 52982927 30 - TSS region transcription start site region 122573
Tssr119829 13 52985974 to 52985981 7 + TSS region transcription start site region 119829
Heal7 13 52990784 to 52990868 84 QTL wound healing/regeneration 7
D13Nds1 13 52990784 to 52990868 84 DNA segment DNA segment, Chr 13, Nuffield Department of Surgery 1
Tssr119830 13 53001861 to 53001870 9 + TSS region transcription start site region 119830
Gm33519 13 53008090 to 53018019 9929 - lncRNA gene predicted gene, 33519
Gm33424 13 53016202 to 53018185 1983 + lincRNA gene predicted gene, 33424
Oit4 13 53018057 to 53018426 369 unclassified gene oncoprotein induced transcript 4
Gm48336 13 53028918 to 53035090 6172 + lincRNA gene predicted gene, 48336
Cpgi5614 13 53049308 to 53049740 432 CpG island CpG island 5614
Ror2 13 53109317 to 53286109 176792 - protein coding gene receptor tyrosine kinase-like orphan receptor 2
Cpgi5615 13 53110234 to 53110615 381 CpG island CpG island 5615
Cpgi5616 13 53111021 to 53111564 543 CpG island CpG island 5616
Cpgi5617 13 53118654 to 53119113 459 CpG island CpG island 5617
Tssr122574 13 53146642 to 53146644 2 - TSS region transcription start site region 122574
Tssr4073 13 53161156 to 53161158 2 + TSS region transcription start site region 4073
Tssr122575 13 53163476 to 53163480 4 - TSS region transcription start site region 122575
Cpgi5618 13 53169125 to 53169369 244 CpG island CpG island 5618
Tssr122576 13 53184118 to 53184123 5 - TSS region transcription start site region 122576
Tssr119831 13 53184502 to 53184513 11 + TSS region transcription start site region 119831
C330026N13Rik 13 53185865 to 53186939 1074 unclassified non-coding RNA gene RIKEN cDNA C330026N13 gene
Cpgi5619 13 53285003 to 53286707 1704 CpG island CpG island 5619
Tssr122577 13 53286052 to 53286129 77 - TSS region transcription start site region 122577
Tssr122578 13 53286195 to 53286213 18 - TSS region transcription start site region 122578
Gm33574 13 53286244 to 53294035 7791 + lncRNA gene predicted gene, 33574
Gm33631 13 53308672 to 53309751 1079 - lncRNA gene predicted gene, 33631
Sptlc1 13 53332748 to 53377397 44649 - protein coding gene serine palmitoyltransferase, long chain base subunit 1
Tssr122579 13 53369775 to 53369779 4 - TSS region transcription start site region 122579
Tssr122580 13 53370257 to 53370266 9 - TSS region transcription start site region 122580
Tssr122581 13 53373778 to 53373785 7 - TSS region transcription start site region 122581
Tssr122582 13 53374307 to 53374319 12 - TSS region transcription start site region 122582
Cpgi5620 13 53377045 to 53377579 534 CpG island CpG island 5620
Tssr122583 13 53377355 to 53377373 18 - TSS region transcription start site region 122583
Tssr119832 13 53393589 to 53393678 89 + TSS region transcription start site region 119832
Tssr119833 13 53393682 to 53393694 12 + TSS region transcription start site region 119833
Gm2762 13 53393689 to 53455630 61941 + lincRNA gene predicted gene 2762
1700058M13Rik 13 53403949 to 53414829 10880 lncRNA gene RIKEN cDNA 1700058M13 gene
Gm43262 13 53403950 to 53414830 10880 - lincRNA gene predicted gene 43262
Tssr122584 13 53414821 to 53414832 11 - TSS region transcription start site region 122584
Gm38564 13 53415943 to 53419345 3402 - protein coding gene predicted gene, 38564
Tssr122585 13 53421644 to 53421662 18 - TSS region transcription start site region 122585
Tssr119834 13 53441907 to 53441912 5 + TSS region transcription start site region 119834
Tssr119835 13 53448251 to 53448257 6 + TSS region transcription start site region 119835
Gm33763 13 53461317 to 53478244 16927 + lncRNA gene predicted gene, 33763
Cpgi5621 13 53461903 to 53462789 886 CpG island CpG island 5621
Cpgi5622 13 53465273 to 53465814 541 CpG island CpG island 5622
Msx2 13 53466881 to 53472780 5899 - protein coding gene msh homeobox 2
Cpgi5623 13 53472121 to 53473156 1035 CpG island CpG island 5623
Tssr122586 13 53472712 to 53472725 13 - TSS region transcription start site region 122586
Tssr122587 13 53472735 to 53472787 52 - TSS region transcription start site region 122587
Tssr122588 13 53472800 to 53472810 10 - TSS region transcription start site region 122588
Tssr122589 13 53472822 to 53472850 28 - TSS region transcription start site region 122589
Cpgi5624 13 53475606 to 53476448 842 CpG island CpG island 5624
Gm40951 13 53478351 to 53481973 3622 + lncRNA gene predicted gene, 40951
Gm33873 13 53482624 to 53505790 23166 + lncRNA gene predicted gene, 33873
Gm40952 13 53501857 to 53504386 2529 - lncRNA gene predicted gene, 40952
Cpgi5625 13 53504744 to 53505143 399 CpG island CpG island 5625
Gm34022 13 53506535 to 53534643 28108 - lincRNA gene predicted gene, 34022
Gm5449 13 53525703 to 53526059 356 + pseudogene predicted pseudogene 5449
Tssr122590 13 53533239 to 53533286 47 - TSS region transcription start site region 122590
9530014B07Rik 13 53635894 to 53639193 3299 - lincRNA gene RIKEN cDNA 9530014B07 gene
Tssr122591 13 53639187 to 53639202 15 - TSS region transcription start site region 122591
Tssr122592 13 53639207 to 53639212 5 - TSS region transcription start site region 122592
Tssr122593 13 53639225 to 53639236 11 - TSS region transcription start site region 122593
Cpgi5626 13 53648441 to 53648669 228 CpG island CpG island 5626
4930555G21Rik 13 53648585 to 53650080 1495 + lincRNA gene RIKEN cDNA 4930555G21 gene
Cpgi5627 13 53670427 to 53670844 417 CpG island CpG island 5627
Gm34278 13 53682556 to 53700474 17918 - lincRNA gene predicted gene, 34278
Gm34332 13 53688767 to 53690351 1584 + lncRNA gene predicted gene, 34332
Gm34439 13 53748391 to 53787724 39333 - lncRNA gene predicted gene, 34439
Gm48548 13 53776627 to 53778973 2346 + lincRNA gene predicted gene, 48548
Cpgi5628 13 53800765 to 53801030 265 CpG island CpG island 5628
Gm40954 13 53839281 to 53850088 10807 - lncRNA gene predicted gene, 40954
Gm18974 13 53888534 to 53889117 583 + pseudogene predicted gene, 18974
E130119H09Rik 13 53912263 to 53915748 3485 - unclassified non-coding RNA gene RIKEN cDNA E130119H09 gene
Tssr122594 13 53915740 to 53915749 9 - TSS region transcription start site region 122594
Gm34557 13 53932983 to 53935283 2300 - lincRNA gene predicted gene, 34557
Gm48550 13 53968944 to 53976666 7722 + lincRNA gene predicted gene, 48550
Drd1 13 54051183 to 54055658 4475 - protein coding gene dopamine receptor D1
Cpgi5629 13 54055010 to 54055905 895 CpG island CpG island 5629
Tssr122595 13 54055088 to 54055118 30 - TSS region transcription start site region 122595
Tssr122596 13 54055650 to 54055680 30 - TSS region transcription start site region 122596
Cpgi5630 13 54071655 to 54072713 1058 CpG island CpG island 5630
Tssr119836 13 54071815 to 54071859 44 + TSS region transcription start site region 119836
Tssr119837 13 54071860 to 54071909 49 + TSS region transcription start site region 119837
Sfxn1 13 54071869 to 54108342 36473 + protein coding gene sideroflexin 1
Tssr122597 13 54072591 to 54072599 8 - TSS region transcription start site region 122597
Tssr119838 13 54073729 to 54073740 11 + TSS region transcription start site region 119838
Tssr122598 13 54106745 to 54106767 22 - TSS region transcription start site region 122598
Tssr119839 13 54106802 to 54106822 20 + TSS region transcription start site region 119839
Tssr119840 13 54107203 to 54107205 2 + TSS region transcription start site region 119840
Gm18473 13 54140933 to 54141798 865 + pseudogene predicted gene, 18473