Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:51789640-54069678

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218 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hpi1 13 4364026 to 52947604 48583578 QTL hapatic PMN infiltration 1
Sema4d 13 51685529 to 51793747 108218 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Cpgi5601 13 51792737 to 51793941 1204 CpG island CpG island 5601
Tssr122540 13 51793533 to 51793542 9 - TSS region transcription start site region 122540
Tssr122541 13 51793615 to 51793624 9 - TSS region transcription start site region 122541
Tssr122542 13 51793650 to 51793713 63 - TSS region transcription start site region 122542
Tssr122543 13 51798533 to 51798558 25 - TSS region transcription start site region 122543
Tssr119770 13 51800232 to 51800245 13 + TSS region transcription start site region 119770
Tssr122544 13 51801149 to 51801154 5 - TSS region transcription start site region 122544
Cpgi5602 13 51806437 to 51806635 198 CpG island CpG island 5602
Cpgi5603 13 51832270 to 51832461 191 CpG island CpG island 5603
Tssr4069 13 51833576 to 51833577 1 + TSS region transcription start site region 4069
Tssr119771 13 51837807 to 51837814 7 + TSS region transcription start site region 119771
Tssr4070 13 51838510 to 51838519 9 + TSS region transcription start site region 4070
Tssr4071 13 51843849 to 51843860 11 - TSS region transcription start site region 4071
Cpgi5604 13 51845290 to 51846225 935 CpG island CpG island 5604
Tssr122545 13 51846284 to 51846288 4 - TSS region transcription start site region 122545
Cpgi5605 13 51846457 to 51848446 1989 CpG island CpG island 5605
Tssr119772 13 51846673 to 51846683 10 + TSS region transcription start site region 119772
Gadd45g 13 51846678 to 51848468 1790 + protein coding gene growth arrest and DNA-damage-inducible 45 gamma
Tssr122546 13 51848289 to 51848319 30 - TSS region transcription start site region 122546
D13Mit183 13 51858105 to 51858240 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 183
Gm26651 13 51973214 to 51976583 3369 + lincRNA gene predicted gene, 26651
Gm37872 13 52019774 to 52021927 2153 - unclassified gene predicted gene, 37872
Gm40948 13 52082639 to 52083607 968 - lncRNA gene predicted gene, 40948
Gm48190 13 52087607 to 52096668 9061 - lincRNA gene predicted gene, 48190
Tssr119773 13 52096712 to 52096718 6 + TSS region transcription start site region 119773
Tssr119774 13 52096725 to 52096747 22 + TSS region transcription start site region 119774
4921525O09Rik 13 52096741 to 52124158 27417 + lncRNA gene RIKEN cDNA 4921525O09 gene
Tssr4072 13 52179590 to 52179592 2 + TSS region transcription start site region 4072
Tssr119775 13 52180261 to 52180266 5 + TSS region transcription start site region 119775
Gm48199 13 52180411 to 52181637 1226 + lincRNA gene predicted gene, 48199
Gm33041 13 52222868 to 52227977 5109 + lncRNA gene predicted gene, 33041
Gm33116 13 52233830 to 52245034 11204 + lncRNA gene predicted gene, 33116
Diras2 13 52504375 to 52531241 26866 - protein coding gene DIRAS family, GTP-binding RAS-like 2
Cpgi5606 13 52507566 to 52508254 688 CpG island CpG island 5606
Tssr122547 13 52507630 to 52507640 10 - TSS region transcription start site region 122547
Cpgi5607 13 52530202 to 52530899 697 CpG island CpG island 5607
Tssr122548 13 52530457 to 52530522 65 - TSS region transcription start site region 122548
Tssr122549 13 52530671 to 52530684 13 - TSS region transcription start site region 122549
Tssr122550 13 52530689 to 52530807 118 - TSS region transcription start site region 122550
Tssr122551 13 52530827 to 52530841 14 - TSS region transcription start site region 122551
Tssr122552 13 52531269 to 52531285 16 - TSS region transcription start site region 122552
Gm33168 13 52550956 to 52557396 6440 + lncRNA gene predicted gene, 33168
Tssr122553 13 52561928 to 52561932 4 - TSS region transcription start site region 122553
Tssr122554 13 52568017 to 52568031 14 - TSS region transcription start site region 122554
Tssr122555 13 52568090 to 52568098 8 - TSS region transcription start site region 122555
Gm2848 13 52569880 to 52573225 3345 - lncRNA gene predicted gene 2848
Tssr122556 13 52572587 to 52572631 44 - TSS region transcription start site region 122556
Tssr122557 13 52573234 to 52573255 21 - TSS region transcription start site region 122557
Tssr119776 13 52582564 to 52582596 32 + TSS region transcription start site region 119776
Tssr119777 13 52582659 to 52582677 18 + TSS region transcription start site region 119777
Tssr119778 13 52582694 to 52582705 11 + TSS region transcription start site region 119778
Tssr119779 13 52582721 to 52582735 14 + TSS region transcription start site region 119779
Tssr119780 13 52582740 to 52582759 19 + TSS region transcription start site region 119780
Cpgi5608 13 52582744 to 52583706 962 CpG island CpG island 5608
Tssr119781 13 52582765 to 52582780 15 + TSS region transcription start site region 119781
Tssr119782 13 52582792 to 52582804 12 + TSS region transcription start site region 119782
Tssr119783 13 52582812 to 52582819 7 + TSS region transcription start site region 119783
Tssr119784 13 52583038 to 52583061 23 + TSS region transcription start site region 119784
Tssr119785 13 52583064 to 52583077 13 + TSS region transcription start site region 119785
Tssr119786 13 52583082 to 52583123 41 + TSS region transcription start site region 119786
Tssr119787 13 52583124 to 52583181 57 + TSS region transcription start site region 119787
Syk 13 52583173 to 52648792 65619 + protein coding gene spleen tyrosine kinase
Tssr119788 13 52583250 to 52583262 12 + TSS region transcription start site region 119788
Tssr119789 13 52583301 to 52583312 11 + TSS region transcription start site region 119789
Tssr119790 13 52583332 to 52583351 19 + TSS region transcription start site region 119790
Tssr119791 13 52583388 to 52583400 12 + TSS region transcription start site region 119791
Tssr119792 13 52583438 to 52583449 11 + TSS region transcription start site region 119792
Tssr119793 13 52583452 to 52583474 22 + TSS region transcription start site region 119793
Tssr119794 13 52583509 to 52583558 49 + TSS region transcription start site region 119794
Tssr122558 13 52584125 to 52584174 49 - TSS region transcription start site region 122558
Tssr119795 13 52585233 to 52585269 36 + TSS region transcription start site region 119795
Tssr119796 13 52585949 to 52585963 14 + TSS region transcription start site region 119796
Tssr122559 13 52587886 to 52587898 12 - TSS region transcription start site region 122559
Tssr119797 13 52588197 to 52588209 12 + TSS region transcription start site region 119797
Tssr119798 13 52591832 to 52591836 4 + TSS region transcription start site region 119798
Tssr119799 13 52596847 to 52596858 11 + TSS region transcription start site region 119799
Tssr119800 13 52596861 to 52596911 50 + TSS region transcription start site region 119800
Tssr119801 13 52596920 to 52596939 19 + TSS region transcription start site region 119801
Tssr119802 13 52596954 to 52596965 11 + TSS region transcription start site region 119802
Tssr122560 13 52600226 to 52600244 18 - TSS region transcription start site region 122560
Tssr119803 13 52606914 to 52606933 19 + TSS region transcription start site region 119803
Tssr119804 13 52607215 to 52607233 18 + TSS region transcription start site region 119804
Tssr119805 13 52607268 to 52607291 23 + TSS region transcription start site region 119805
Tssr119806 13 52609358 to 52609373 15 + TSS region transcription start site region 119806
Tssr119807 13 52610723 to 52610734 11 + TSS region transcription start site region 119807
Tssr119808 13 52610897 to 52610916 19 + TSS region transcription start site region 119808
Tssr119809 13 52610930 to 52610957 27 + TSS region transcription start site region 119809
Tssr119810 13 52617375 to 52617385 10 + TSS region transcription start site region 119810
Tssr119811 13 52617396 to 52617403 7 + TSS region transcription start site region 119811
Tssr119812 13 52618192 to 52618208 16 + TSS region transcription start site region 119812
Tssr119813 13 52618663 to 52618682 19 + TSS region transcription start site region 119813
Tssr119814 13 52618711 to 52618756 45 + TSS region transcription start site region 119814
Tssr119815 13 52620935 to 52620947 12 + TSS region transcription start site region 119815
Tssr119816 13 52630037 to 52630054 17 + TSS region transcription start site region 119816
Tssr119817 13 52632957 to 52632986 29 + TSS region transcription start site region 119817
Tssr119818 13 52633327 to 52633337 10 + TSS region transcription start site region 119818
Tssr119819 13 52634279 to 52634297 18 + TSS region transcription start site region 119819
Tssr119820 13 52635959 to 52635970 11 + TSS region transcription start site region 119820
Tssr119821 13 52637151 to 52637161 10 + TSS region transcription start site region 119821
Cpgi5609 13 52638136 to 52638296 160 CpG island CpG island 5609
Tssr119822 13 52641148 to 52641156 8 + TSS region transcription start site region 119822
Tssr119823 13 52646534 to 52646547 13 + TSS region transcription start site region 119823
Tssr119824 13 52646919 to 52646950 31 + TSS region transcription start site region 119824
Tssr119825 13 52647007 to 52647018 11 + TSS region transcription start site region 119825
Tssr119826 13 52648108 to 52648128 20 + TSS region transcription start site region 119826
Tssr119827 13 52677318 to 52677320 2 + TSS region transcription start site region 119827
BB123696 13 52729615 to 52757205 27590 - lincRNA gene expressed sequence BB123696
Tssr122561 13 52735592 to 52735612 20 - TSS region transcription start site region 122561
D13Mit249 13 52752300 to 52752398 98 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 249
Cpgi5610 13 52793542 to 52793725 183 CpG island CpG island 5610
Tssr122562 13 52820243 to 52820255 12 - TSS region transcription start site region 122562
Gm33315 13 52828125 to 52845595 17470 + lncRNA gene predicted gene, 33315
Auh 13 52835119 to 52929681 94562 - protein coding gene AU RNA binding protein/enoyl-coenzyme A hydratase
Tssr122563 13 52843432 to 52843433 1 - TSS region transcription start site region 122563
D13Mit140 13 52872415 to 52872520 105 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 140
Cpgi5611 13 52929167 to 52929945 778 CpG island CpG island 5611
Tssr122564 13 52929484 to 52929497 13 - TSS region transcription start site region 122564
Tssr122565 13 52929618 to 52929629 11 - TSS region transcription start site region 122565
Tssr122566 13 52929640 to 52929678 38 - TSS region transcription start site region 122566
Pfat3 13 52947494 to 52947604 110 QTL predicted fat percentage 3
Acsns2 13 52947494 to 52947604 110 QTL Angiostrongylus costaricensis nematode susceptibility 2
D13Mit248 13 52947494 to 52947604 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 248
Gm40950 13 52954388 to 52967120 12732 + lncRNA gene predicted gene, 40950
n-R5s54 13 52964621 to 52964732 111 - rRNA gene nuclear encoded rRNA 5S 54
Nfil3 13 52967209 to 52981073 13864 - protein coding gene nuclear factor, interleukin 3, regulated
Tssr122567 13 52978159 to 52978169 10 - TSS region transcription start site region 122567
Cpgi5612 13 52978303 to 52978995 692 CpG island CpG island 5612
Tssr122568 13 52979838 to 52979844 6 - TSS region transcription start site region 122568
Cpgi5613 13 52980014 to 52982198 2184 CpG island CpG island 5613
Tssr122569 13 52981013 to 52981024 11 - TSS region transcription start site region 122569
Tssr122570 13 52981027 to 52981083 56 - TSS region transcription start site region 122570
Tssr119828 13 52981221 to 52981244 23 + TSS region transcription start site region 119828
Tssr122571 13 52981966 to 52981979 13 - TSS region transcription start site region 122571
Tssr122572 13 52982700 to 52982707 7 - TSS region transcription start site region 122572
Tssr122573 13 52982897 to 52982927 30 - TSS region transcription start site region 122573
Tssr119829 13 52985974 to 52985981 7 + TSS region transcription start site region 119829
D13Nds1 13 52990784 to 52990868 84 DNA segment DNA segment, Chr 13, Nuffield Department of Surgery 1
Heal7 13 52990784 to 52990868 84 QTL wound healing/regeneration 7
Tssr119830 13 53001861 to 53001870 9 + TSS region transcription start site region 119830
Gm33519 13 53008090 to 53018019 9929 - lncRNA gene predicted gene, 33519
Gm33424 13 53016202 to 53018185 1983 + lincRNA gene predicted gene, 33424
Oit4 13 53018057 to 53018426 369 unclassified gene oncoprotein induced transcript 4
Gm48336 13 53028918 to 53035090 6172 + lincRNA gene predicted gene, 48336
Cpgi5614 13 53049308 to 53049740 432 CpG island CpG island 5614
Ror2 13 53109317 to 53286109 176792 - protein coding gene receptor tyrosine kinase-like orphan receptor 2
Cpgi5615 13 53110234 to 53110615 381 CpG island CpG island 5615
Cpgi5616 13 53111021 to 53111564 543 CpG island CpG island 5616
Cpgi5617 13 53118654 to 53119113 459 CpG island CpG island 5617
Tssr122574 13 53146642 to 53146644 2 - TSS region transcription start site region 122574
Tssr4073 13 53161156 to 53161158 2 + TSS region transcription start site region 4073
Tssr122575 13 53163476 to 53163480 4 - TSS region transcription start site region 122575
Cpgi5618 13 53169125 to 53169369 244 CpG island CpG island 5618
Tssr122576 13 53184118 to 53184123 5 - TSS region transcription start site region 122576
Tssr119831 13 53184502 to 53184513 11 + TSS region transcription start site region 119831
C330026N13Rik 13 53185865 to 53186939 1074 unclassified non-coding RNA gene RIKEN cDNA C330026N13 gene
Cpgi5619 13 53285003 to 53286707 1704 CpG island CpG island 5619
Tssr122577 13 53286052 to 53286129 77 - TSS region transcription start site region 122577
Tssr122578 13 53286195 to 53286213 18 - TSS region transcription start site region 122578
Gm33574 13 53286244 to 53294035 7791 + lncRNA gene predicted gene, 33574
Gm33631 13 53308672 to 53309751 1079 - lncRNA gene predicted gene, 33631
Sptlc1 13 53332748 to 53377397 44649 - protein coding gene serine palmitoyltransferase, long chain base subunit 1
Tssr122579 13 53369775 to 53369779 4 - TSS region transcription start site region 122579
Tssr122580 13 53370257 to 53370266 9 - TSS region transcription start site region 122580
Tssr122581 13 53373778 to 53373785 7 - TSS region transcription start site region 122581
Tssr122582 13 53374307 to 53374319 12 - TSS region transcription start site region 122582
Cpgi5620 13 53377045 to 53377579 534 CpG island CpG island 5620
Tssr122583 13 53377355 to 53377373 18 - TSS region transcription start site region 122583
Tssr119832 13 53393589 to 53393678 89 + TSS region transcription start site region 119832
Tssr119833 13 53393682 to 53393694 12 + TSS region transcription start site region 119833
Gm2762 13 53393689 to 53455630 61941 + lincRNA gene predicted gene 2762
1700058M13Rik 13 53403949 to 53414829 10880 lncRNA gene RIKEN cDNA 1700058M13 gene
Gm43262 13 53403950 to 53414830 10880 - lincRNA gene predicted gene 43262
Tssr122584 13 53414821 to 53414832 11 - TSS region transcription start site region 122584
Gm38564 13 53415943 to 53419345 3402 - protein coding gene predicted gene, 38564
Tssr122585 13 53421644 to 53421662 18 - TSS region transcription start site region 122585
Tssr119834 13 53441907 to 53441912 5 + TSS region transcription start site region 119834
Tssr119835 13 53448251 to 53448257 6 + TSS region transcription start site region 119835
Gm33763 13 53461317 to 53478244 16927 + lncRNA gene predicted gene, 33763
Cpgi5621 13 53461903 to 53462789 886 CpG island CpG island 5621
Cpgi5622 13 53465273 to 53465814 541 CpG island CpG island 5622
Msx2 13 53466881 to 53472780 5899 - protein coding gene msh homeobox 2
Cpgi5623 13 53472121 to 53473156 1035 CpG island CpG island 5623
Tssr122586 13 53472712 to 53472725 13 - TSS region transcription start site region 122586
Tssr122587 13 53472735 to 53472787 52 - TSS region transcription start site region 122587
Tssr122588 13 53472800 to 53472810 10 - TSS region transcription start site region 122588
Tssr122589 13 53472822 to 53472850 28 - TSS region transcription start site region 122589
Cpgi5624 13 53475606 to 53476448 842 CpG island CpG island 5624
Gm40951 13 53478351 to 53481973 3622 + lncRNA gene predicted gene, 40951
Gm33873 13 53482624 to 53505790 23166 + lncRNA gene predicted gene, 33873
Gm40952 13 53501857 to 53504386 2529 - lncRNA gene predicted gene, 40952
Cpgi5625 13 53504744 to 53505143 399 CpG island CpG island 5625
Gm34022 13 53506535 to 53534643 28108 - lincRNA gene predicted gene, 34022
Gm5449 13 53525703 to 53526059 356 + pseudogene predicted pseudogene 5449
Tssr122590 13 53533239 to 53533286 47 - TSS region transcription start site region 122590
9530014B07Rik 13 53635894 to 53639193 3299 - lincRNA gene RIKEN cDNA 9530014B07 gene
Tssr122591 13 53639187 to 53639202 15 - TSS region transcription start site region 122591
Tssr122592 13 53639207 to 53639212 5 - TSS region transcription start site region 122592
Tssr122593 13 53639225 to 53639236 11 - TSS region transcription start site region 122593