Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:51785261-52575266

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema4d 13 51685529 to 51793747 108218 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Tssr122539 13 51788406 to 51788411 5 - TSS region transcription start site region 122539
Cpgi5601 13 51792737 to 51793941 1204 CpG island CpG island 5601
Tssr122540 13 51793533 to 51793542 9 - TSS region transcription start site region 122540
Tssr122541 13 51793615 to 51793624 9 - TSS region transcription start site region 122541
Tssr122542 13 51793650 to 51793713 63 - TSS region transcription start site region 122542
Tssr122543 13 51798533 to 51798558 25 - TSS region transcription start site region 122543
Tssr119770 13 51800232 to 51800245 13 + TSS region transcription start site region 119770
Tssr122544 13 51801149 to 51801154 5 - TSS region transcription start site region 122544
Cpgi5602 13 51806437 to 51806635 198 CpG island CpG island 5602
Cpgi5603 13 51832270 to 51832461 191 CpG island CpG island 5603
Tssr4069 13 51833576 to 51833577 1 + TSS region transcription start site region 4069
Tssr119771 13 51837807 to 51837814 7 + TSS region transcription start site region 119771
Tssr4070 13 51838510 to 51838519 9 + TSS region transcription start site region 4070
Tssr4071 13 51843849 to 51843860 11 - TSS region transcription start site region 4071
Cpgi5604 13 51845290 to 51846225 935 CpG island CpG island 5604
Tssr122545 13 51846284 to 51846288 4 - TSS region transcription start site region 122545
Cpgi5605 13 51846457 to 51848446 1989 CpG island CpG island 5605
Tssr119772 13 51846673 to 51846683 10 + TSS region transcription start site region 119772
Gadd45g 13 51846678 to 51848468 1790 + protein coding gene growth arrest and DNA-damage-inducible 45 gamma
Tssr122546 13 51848289 to 51848319 30 - TSS region transcription start site region 122546
D13Mit183 13 51858105 to 51858240 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 183
Gm26651 13 51973214 to 51976583 3369 + lincRNA gene predicted gene, 26651
Gm37872 13 52019774 to 52021927 2153 - unclassified gene predicted gene, 37872
Gm40948 13 52082639 to 52083607 968 - lncRNA gene predicted gene, 40948
Gm48190 13 52087607 to 52096668 9061 - lincRNA gene predicted gene, 48190
Tssr119773 13 52096712 to 52096718 6 + TSS region transcription start site region 119773
Tssr119774 13 52096725 to 52096747 22 + TSS region transcription start site region 119774
4921525O09Rik 13 52096741 to 52124158 27417 + lncRNA gene RIKEN cDNA 4921525O09 gene
Tssr4072 13 52179590 to 52179592 2 + TSS region transcription start site region 4072
Tssr119775 13 52180261 to 52180266 5 + TSS region transcription start site region 119775
Gm48199 13 52180411 to 52181637 1226 + lincRNA gene predicted gene, 48199
Gm33041 13 52222868 to 52227977 5109 + lncRNA gene predicted gene, 33041
Gm33116 13 52233830 to 52245034 11204 + lncRNA gene predicted gene, 33116
Diras2 13 52504375 to 52531241 26866 - protein coding gene DIRAS family, GTP-binding RAS-like 2
Cpgi5606 13 52507566 to 52508254 688 CpG island CpG island 5606
Tssr122547 13 52507630 to 52507640 10 - TSS region transcription start site region 122547
Cpgi5607 13 52530202 to 52530899 697 CpG island CpG island 5607
Tssr122548 13 52530457 to 52530522 65 - TSS region transcription start site region 122548
Tssr122549 13 52530671 to 52530684 13 - TSS region transcription start site region 122549
Tssr122550 13 52530689 to 52530807 118 - TSS region transcription start site region 122550
Tssr122551 13 52530827 to 52530841 14 - TSS region transcription start site region 122551
Tssr122552 13 52531269 to 52531285 16 - TSS region transcription start site region 122552
Gm33168 13 52550956 to 52557396 6440 + lncRNA gene predicted gene, 33168
Tssr122553 13 52561928 to 52561932 4 - TSS region transcription start site region 122553
Tssr122554 13 52568017 to 52568031 14 - TSS region transcription start site region 122554
Tssr122555 13 52568090 to 52568098 8 - TSS region transcription start site region 122555
Gm2848 13 52569880 to 52573225 3345 - lncRNA gene predicted gene 2848
Tssr122556 13 52572587 to 52572631 44 - TSS region transcription start site region 122556
Tssr122557 13 52573234 to 52573255 21 - TSS region transcription start site region 122557