Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:51084082-52374099

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
9430083A17Rik 13 51097738 to 51100727 2989 - lncRNA gene RIKEN cDNA 9430083A17 gene
Cpgi5591 13 51099971 to 51101770 1799 CpG island CpG island 5591
Tssr119745 13 51100473 to 51100492 19 + TSS region transcription start site region 119745
Tssr119746 13 51100494 to 51100515 21 + TSS region transcription start site region 119746
Tssr119747 13 51100781 to 51100799 18 + TSS region transcription start site region 119747
Tssr119748 13 51100810 to 51100933 123 + TSS region transcription start site region 119748
Spin1 13 51100880 to 51152546 51666 + protein coding gene spindlin 1
Tssr119749 13 51101203 to 51101231 28 + TSS region transcription start site region 119749
Tssr122503 13 51101509 to 51101530 21 - TSS region transcription start site region 122503
Tssr119750 13 51132279 to 51132283 4 + TSS region transcription start site region 119750
Tssr119751 13 51137681 to 51137685 4 + TSS region transcription start site region 119751
Tssr119752 13 51157178 to 51157182 4 + TSS region transcription start site region 119752
Tssr119753 13 51166008 to 51166019 11 + TSS region transcription start site region 119753
Cpgi5592 13 51170752 to 51171933 1181 CpG island CpG island 5592
Nxnl2 13 51171022 to 51175188 4166 + protein coding gene nucleoredoxin-like 2
Tssr119754 13 51171234 to 51171258 24 + TSS region transcription start site region 119754
Tssr119755 13 51171295 to 51171305 10 + TSS region transcription start site region 119755
Gm44341 13 51202698 to 51202835 137 + miRNA gene predicted gene, 44341
Hist1h2al 13 51202727 to 51203065 338 - pseudogene histone cluster 1, H2al
Tssr119756 13 51203208 to 51203213 5 + TSS region transcription start site region 119756
Gm29787 13 51205263 to 51206111 848 - pseudogene predicted gene, 29787
Gm46414 13 51208641 to 51372636 163995 + lncRNA gene predicted gene, 46414
Cpgi5593 13 51229279 to 51229687 408 CpG island CpG island 5593
Gm6056 13 51338921 to 51339707 786 + pseudogene predicted gene 6056
Gm47554 13 51344996 to 51345598 602 + pseudogene predicted gene, 47554
Gm32834 13 51378153 to 51418686 40533 - lincRNA gene predicted gene, 32834
D13Mit156.1 13 51395069 to 51395242 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 156.1
D13Mit156 13 51395203 to 51395331 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 156
Cpgi5594 13 51408488 to 51409079 591 CpG island CpG island 5594
S1pr3 13 51408639 to 51422797 14158 + protein coding gene sphingosine-1-phosphate receptor 3
Tssr119757 13 51408756 to 51408781 25 + TSS region transcription start site region 119757
Cpgi5595 13 51419394 to 51419581 187 CpG island CpG island 5595
Shc3 13 51431041 to 51567084 136043 - protein coding gene src homology 2 domain-containing transforming protein C3
D13Mit247 13 51476607 to 51476720 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 247
Cpgi5596 13 51566556 to 51567912 1356 CpG island CpG island 5596
Tssr122504 13 51567750 to 51567773 23 - TSS region transcription start site region 122504
Tssr122505 13 51567780 to 51567836 56 - TSS region transcription start site region 122505
Tssr122506 13 51568052 to 51568094 42 - TSS region transcription start site region 122506
Tssr122507 13 51568301 to 51568333 32 - TSS region transcription start site region 122507
Cpgi5597 13 51568728 to 51569331 603 CpG island CpG island 5597
Tssr122508 13 51569076 to 51569116 40 - TSS region transcription start site region 122508
Tssr122509 13 51569171 to 51569192 21 - TSS region transcription start site region 122509
Tssr122510 13 51569341 to 51569345 4 - TSS region transcription start site region 122510
Tssr122511 13 51569437 to 51569467 30 - TSS region transcription start site region 122511
Cpgi5598 13 51594793 to 51595323 530 CpG island CpG island 5598
Tssr119758 13 51642682 to 51642690 8 + TSS region transcription start site region 119758
Cpgi5599 13 51644787 to 51645842 1055 CpG island CpG island 5599
Tssr122512 13 51644894 to 51644899 5 - TSS region transcription start site region 122512
Cks2 13 51645232 to 51650660 5428 + protein coding gene CDC28 protein kinase regulatory subunit 2
Tssr119759 13 51645268 to 51645276 8 + TSS region transcription start site region 119759
Tssr119760 13 51645284 to 51645299 15 + TSS region transcription start site region 119760
Tssr119761 13 51645310 to 51645332 22 + TSS region transcription start site region 119761
Tssr119762 13 51645370 to 51645392 22 + TSS region transcription start site region 119762
Tssr119763 13 51645692 to 51645727 35 + TSS region transcription start site region 119763
Tssr119764 13 51645736 to 51645747 11 + TSS region transcription start site region 119764
Gm22806 13 51648199 to 51648334 135 + snoRNA gene predicted gene, 22806
Cpgi5600 13 51651198 to 51652137 939 CpG island CpG island 5600
Tssr119765 13 51651573 to 51651582 9 + TSS region transcription start site region 119765
Tssr119766 13 51651691 to 51651702 11 + TSS region transcription start site region 119766
Secisbp2 13 51651697 to 51684044 32347 + protein coding gene SECIS binding protein 2
Tssr119767 13 51651709 to 51651746 37 + TSS region transcription start site region 119767
Tssr119768 13 51651761 to 51651777 16 + TSS region transcription start site region 119768
Sema4d 13 51685529 to 51793747 108218 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Tssr122513 13 51701396 to 51701418 22 - TSS region transcription start site region 122513
Tssr122514 13 51701723 to 51701742 19 - TSS region transcription start site region 122514
Tssr122515 13 51701900 to 51701926 26 - TSS region transcription start site region 122515
Tssr122516 13 51702116 to 51702141 25 - TSS region transcription start site region 122516
Tssr122517 13 51702174 to 51702194 20 - TSS region transcription start site region 122517
Tssr122518 13 51703110 to 51703131 21 - TSS region transcription start site region 122518
Tssr122519 13 51703149 to 51703162 13 - TSS region transcription start site region 122519
Tssr122520 13 51703401 to 51703422 21 - TSS region transcription start site region 122520
Tssr119769 13 51709955 to 51709985 30 + TSS region transcription start site region 119769
Tssr122521 13 51714816 to 51714846 30 - TSS region transcription start site region 122521
Tssr122522 13 51717813 to 51717833 20 - TSS region transcription start site region 122522
Tssr122523 13 51729082 to 51729099 17 - TSS region transcription start site region 122523
Tssr122524 13 51733709 to 51733756 47 - TSS region transcription start site region 122524
Tssr122525 13 51734615 to 51734626 11 - TSS region transcription start site region 122525
Tssr122526 13 51734644 to 51734667 23 - TSS region transcription start site region 122526
Tssr122527 13 51734683 to 51734693 10 - TSS region transcription start site region 122527
Tssr122528 13 51734695 to 51734747 52 - TSS region transcription start site region 122528
Tssr122529 13 51739772 to 51739781 9 - TSS region transcription start site region 122529
Tssr122530 13 51739788 to 51739813 25 - TSS region transcription start site region 122530
Tssr122531 13 51748775 to 51748821 46 - TSS region transcription start site region 122531
Tssr122532 13 51756605 to 51756636 31 - TSS region transcription start site region 122532
Tssr122533 13 51756662 to 51756691 29 - TSS region transcription start site region 122533
Tssr122534 13 51763384 to 51763398 14 - TSS region transcription start site region 122534
Tssr122535 13 51763409 to 51763427 18 - TSS region transcription start site region 122535
Tssr122536 13 51763430 to 51763478 48 - TSS region transcription start site region 122536
Gm23566 13 51765294 to 51765401 107 + miRNA gene predicted gene, 23566
Tssr122537 13 51767563 to 51767568 5 - TSS region transcription start site region 122537
D13Mit139 13 51767907 to 51768045 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 139
Sluc23 13 51767907 to 51768045 138 QTL susceptibility to lung cancer 23
Tssr122538 13 51777119 to 51777141 22 - TSS region transcription start site region 122538
Tssr122539 13 51788406 to 51788411 5 - TSS region transcription start site region 122539
Cpgi5601 13 51792737 to 51793941 1204 CpG island CpG island 5601
Tssr122540 13 51793533 to 51793542 9 - TSS region transcription start site region 122540
Tssr122541 13 51793615 to 51793624 9 - TSS region transcription start site region 122541
Tssr122542 13 51793650 to 51793713 63 - TSS region transcription start site region 122542
Tssr122543 13 51798533 to 51798558 25 - TSS region transcription start site region 122543
Tssr119770 13 51800232 to 51800245 13 + TSS region transcription start site region 119770
Tssr122544 13 51801149 to 51801154 5 - TSS region transcription start site region 122544
Cpgi5602 13 51806437 to 51806635 198 CpG island CpG island 5602
Cpgi5603 13 51832270 to 51832461 191 CpG island CpG island 5603
Tssr4069 13 51833576 to 51833577 1 + TSS region transcription start site region 4069
Tssr119771 13 51837807 to 51837814 7 + TSS region transcription start site region 119771
Tssr4070 13 51838510 to 51838519 9 + TSS region transcription start site region 4070
Tssr4071 13 51843849 to 51843860 11 - TSS region transcription start site region 4071
Cpgi5604 13 51845290 to 51846225 935 CpG island CpG island 5604
Tssr122545 13 51846284 to 51846288 4 - TSS region transcription start site region 122545
Cpgi5605 13 51846457 to 51848446 1989 CpG island CpG island 5605
Tssr119772 13 51846673 to 51846683 10 + TSS region transcription start site region 119772
Gadd45g 13 51846678 to 51848468 1790 + protein coding gene growth arrest and DNA-damage-inducible 45 gamma
Tssr122546 13 51848289 to 51848319 30 - TSS region transcription start site region 122546
D13Mit183 13 51858105 to 51858240 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 183
Gm26651 13 51973214 to 51976583 3369 + lincRNA gene predicted gene, 26651
Gm37872 13 52019774 to 52021927 2153 - unclassified gene predicted gene, 37872
Gm40948 13 52082639 to 52083607 968 - lncRNA gene predicted gene, 40948
Gm48190 13 52087607 to 52096668 9061 - lincRNA gene predicted gene, 48190
Tssr119773 13 52096712 to 52096718 6 + TSS region transcription start site region 119773
Tssr119774 13 52096725 to 52096747 22 + TSS region transcription start site region 119774
4921525O09Rik 13 52096741 to 52124158 27417 + lncRNA gene RIKEN cDNA 4921525O09 gene
Tssr4072 13 52179590 to 52179592 2 + TSS region transcription start site region 4072
Tssr119775 13 52180261 to 52180266 5 + TSS region transcription start site region 119775
Gm48199 13 52180411 to 52181637 1226 + lincRNA gene predicted gene, 48199
Gm33041 13 52222868 to 52227977 5109 + lncRNA gene predicted gene, 33041
Gm33116 13 52233830 to 52245034 11204 + lncRNA gene predicted gene, 33116