Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:50433133-51593330

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxw17 13 50417864 to 50433780 15916 + protein coding gene F-box and WD-40 domain protein 17
Gm47429 13 50443408 to 50443912 504 - protein coding gene predicted gene, 47429
Tssr122494 13 50443850 to 50443860 10 - TSS region transcription start site region 122494
Tssr122495 13 50443867 to 50443894 27 - TSS region transcription start site region 122495
Tssr122496 13 50443910 to 50443914 4 - TSS region transcription start site region 122496
Gm40946 13 50448942 to 50465268 16326 - lncRNA gene predicted gene, 40946
Cpgi5590 13 50464843 to 50465103 260 CpG island CpG island 5590
Nutm2 13 50467307 to 50475355 8048 + protein coding gene NUT family member 2
Gm7259 13 50490585 to 50491435 850 + pseudogene predicted gene 7259
Gm31835 13 50516647 to 50539528 22881 - lncRNA gene predicted gene, 31835
Mir683-1 13 50544626 to 50544734 108 - miRNA gene microRNA 683-1
Gm20789 13 50561473 to 50570876 9403 + pseudogene predicted gene, 20789
D13Mit246b 13 50572643 to 50572816 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246b
Gm31712 13 50572802 to 50595600 22798 - lncRNA gene predicted gene, 31712
Tssr122497 13 50595494 to 50595531 37 - TSS region transcription start site region 122497
Mir683-2 13 50600972 to 50601080 108 - miRNA gene microRNA 683-2
Gm31890 13 50610205 to 50613242 3037 - pseudogene predicted gene, 31890
Gm29777 13 50610733 to 50618160 7427 - pseudogene predicted gene, 29777
Gm904 13 50643228 to 50645838 2610 + protein coding gene predicted gene 904
Gm19663 13 50647276 to 50649746 2470 + pseudogene predicted gene, 19663
Gm32038 13 50651705 to 50673401 21696 - lncRNA gene predicted gene, 32038
Gm23952 13 50679537 to 50679645 108 - miRNA gene predicted gene, 23952
Gm8765 13 50698312 to 50703435 5123 + protein coding gene predicted gene 8765
4930518P08Rik 13 50753393 to 50765248 11855 - lincRNA gene RIKEN cDNA 4930518P08 gene
Gm17761 13 50758754 to 50759668 914 + pseudogene predicted gene, 17761
Gm2654 13 50786144 to 50787735 1591 + pseudogene predicted gene 2654
Gm40947 13 50854923 to 50878273 23350 - lncRNA gene predicted gene, 40947
Gm19009 13 50859346 to 50860156 810 - pseudogene predicted gene, 19009
Gm8777 13 50885270 to 50891424 6154 + protein coding gene predicted gene 8777
Tssr4068 13 50885852 to 50885859 7 + TSS region transcription start site region 4068
1700048B10Rik 13 50913817 to 50934152 20335 - lncRNA gene RIKEN cDNA 1700048B10 gene
Tssr122498 13 50934147 to 50934186 39 - TSS region transcription start site region 122498
Gm9702 13 50936043 to 50937246 1203 - pseudogene predicted gene 9702
Tssr119744 13 50950180 to 50950189 9 + TSS region transcription start site region 119744
Gm8779 13 50950222 to 50951017 795 + pseudogene predicted gene 8779
Gm32613 13 50981488 to 50991416 9928 - lncRNA gene predicted gene, 32613
Tssr122499 13 50991327 to 50991337 10 - TSS region transcription start site region 122499
Tssr122500 13 50991355 to 50991376 21 - TSS region transcription start site region 122500
D13Mit166 13 51013133 to 51013330 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 166
Gm22199 13 51014086 to 51014211 125 + unclassified non-coding RNA gene predicted gene, 22199
Tssr122501 13 51015179 to 51015184 5 - TSS region transcription start site region 122501
Tssr122502 13 51026410 to 51026454 44 - TSS region transcription start site region 122502
9430083A17Rik 13 51097738 to 51100727 2989 - lncRNA gene RIKEN cDNA 9430083A17 gene
Cpgi5591 13 51099971 to 51101770 1799 CpG island CpG island 5591
Tssr119745 13 51100473 to 51100492 19 + TSS region transcription start site region 119745
Tssr119746 13 51100494 to 51100515 21 + TSS region transcription start site region 119746
Tssr119747 13 51100781 to 51100799 18 + TSS region transcription start site region 119747
Tssr119748 13 51100810 to 51100933 123 + TSS region transcription start site region 119748
Spin1 13 51100880 to 51152546 51666 + protein coding gene spindlin 1
Tssr119749 13 51101203 to 51101231 28 + TSS region transcription start site region 119749
Tssr122503 13 51101509 to 51101530 21 - TSS region transcription start site region 122503
Tssr119750 13 51132279 to 51132283 4 + TSS region transcription start site region 119750
Tssr119751 13 51137681 to 51137685 4 + TSS region transcription start site region 119751
Tssr119752 13 51157178 to 51157182 4 + TSS region transcription start site region 119752
Tssr119753 13 51166008 to 51166019 11 + TSS region transcription start site region 119753
Cpgi5592 13 51170752 to 51171933 1181 CpG island CpG island 5592
Nxnl2 13 51171022 to 51175188 4166 + protein coding gene nucleoredoxin-like 2
Tssr119754 13 51171234 to 51171258 24 + TSS region transcription start site region 119754
Tssr119755 13 51171295 to 51171305 10 + TSS region transcription start site region 119755
Gm44341 13 51202698 to 51202835 137 + miRNA gene predicted gene, 44341
Hist1h2al 13 51202727 to 51203065 338 - pseudogene histone cluster 1, H2al
Tssr119756 13 51203208 to 51203213 5 + TSS region transcription start site region 119756
Gm29787 13 51205263 to 51206111 848 - pseudogene predicted gene, 29787
Gm46414 13 51208641 to 51372636 163995 + lncRNA gene predicted gene, 46414
Cpgi5593 13 51229279 to 51229687 408 CpG island CpG island 5593
Gm6056 13 51338921 to 51339707 786 + pseudogene predicted gene 6056
Gm47554 13 51344996 to 51345598 602 + pseudogene predicted gene, 47554
Gm32834 13 51378153 to 51418686 40533 - lincRNA gene predicted gene, 32834
D13Mit156.1 13 51395069 to 51395242 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 156.1
D13Mit156 13 51395203 to 51395331 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 156
Cpgi5594 13 51408488 to 51409079 591 CpG island CpG island 5594
S1pr3 13 51408639 to 51422797 14158 + protein coding gene sphingosine-1-phosphate receptor 3
Tssr119757 13 51408756 to 51408781 25 + TSS region transcription start site region 119757
Cpgi5595 13 51419394 to 51419581 187 CpG island CpG island 5595
Shc3 13 51431041 to 51567084 136043 - protein coding gene src homology 2 domain-containing transforming protein C3
D13Mit247 13 51476607 to 51476720 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 247
Cpgi5596 13 51566556 to 51567912 1356 CpG island CpG island 5596
Tssr122504 13 51567750 to 51567773 23 - TSS region transcription start site region 122504
Tssr122505 13 51567780 to 51567836 56 - TSS region transcription start site region 122505
Tssr122506 13 51568052 to 51568094 42 - TSS region transcription start site region 122506
Tssr122507 13 51568301 to 51568333 32 - TSS region transcription start site region 122507
Cpgi5597 13 51568728 to 51569331 603 CpG island CpG island 5597
Tssr122508 13 51569076 to 51569116 40 - TSS region transcription start site region 122508
Tssr122509 13 51569171 to 51569192 21 - TSS region transcription start site region 122509
Tssr122510 13 51569341 to 51569345 4 - TSS region transcription start site region 122510
Tssr122511 13 51569437 to 51569467 30 - TSS region transcription start site region 122511