Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:50282276-51014811

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit246a 13 50289804 to 50289987 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246a
Gm9699 13 50291081 to 50293188 2107 - pseudogene predicted gene 9699
Gm46384 13 50300800 to 50302602 1802 - pseudogene predicted gene, 46384
Gm46385 13 50300899 to 50342216 41317 - pseudogene predicted gene, 46385
Gm8739 13 50343611 to 50344161 550 - antisense lncRNA gene predicted gene 8739
Gm19536 13 50399335 to 50400423 1088 - protein coding gene predicted gene, 19536
Gm8742 13 50412062 to 50414576 2514 - pseudogene predicted gene 8742
Cpgi5589 13 50417714 to 50418214 500 CpG island CpG island 5589
Tssr119740 13 50417856 to 50417872 16 + TSS region transcription start site region 119740
Fbxw17 13 50417864 to 50433780 15916 + protein coding gene F-box and WD-40 domain protein 17
Tssr119741 13 50417874 to 50417912 38 + TSS region transcription start site region 119741
Tssr119742 13 50417925 to 50417932 7 + TSS region transcription start site region 119742
Tssr119743 13 50422609 to 50422616 7 + TSS region transcription start site region 119743
Gm47429 13 50443408 to 50443912 504 - protein coding gene predicted gene, 47429
Tssr122494 13 50443850 to 50443860 10 - TSS region transcription start site region 122494
Tssr122495 13 50443867 to 50443894 27 - TSS region transcription start site region 122495
Tssr122496 13 50443910 to 50443914 4 - TSS region transcription start site region 122496
Gm40946 13 50448942 to 50465268 16326 - lncRNA gene predicted gene, 40946
Cpgi5590 13 50464843 to 50465103 260 CpG island CpG island 5590
Nutm2 13 50467307 to 50475355 8048 + protein coding gene NUT family member 2
Gm7259 13 50490585 to 50491435 850 + pseudogene predicted gene 7259
Gm31835 13 50516647 to 50539528 22881 - lncRNA gene predicted gene, 31835
Mir683-1 13 50544626 to 50544734 108 - miRNA gene microRNA 683-1
Gm20789 13 50561473 to 50570876 9403 + pseudogene predicted gene, 20789
D13Mit246b 13 50572643 to 50572816 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246b
Gm31712 13 50572802 to 50595600 22798 - lncRNA gene predicted gene, 31712
Tssr122497 13 50595494 to 50595531 37 - TSS region transcription start site region 122497
Mir683-2 13 50600972 to 50601080 108 - miRNA gene microRNA 683-2
Gm31890 13 50610205 to 50613242 3037 - pseudogene predicted gene, 31890
Gm29777 13 50610733 to 50618160 7427 - pseudogene predicted gene, 29777
Gm904 13 50643228 to 50645838 2610 + protein coding gene predicted gene 904
Gm19663 13 50647276 to 50649746 2470 + pseudogene predicted gene, 19663
Gm32038 13 50651705 to 50673401 21696 - lncRNA gene predicted gene, 32038
Gm23952 13 50679537 to 50679645 108 - miRNA gene predicted gene, 23952
Gm8765 13 50698312 to 50703435 5123 + protein coding gene predicted gene 8765
4930518P08Rik 13 50753393 to 50765248 11855 - lincRNA gene RIKEN cDNA 4930518P08 gene
Gm17761 13 50758754 to 50759668 914 + pseudogene predicted gene, 17761
Gm2654 13 50786144 to 50787735 1591 + pseudogene predicted gene 2654
Gm40947 13 50854923 to 50878273 23350 - lncRNA gene predicted gene, 40947
Gm19009 13 50859346 to 50860156 810 - pseudogene predicted gene, 19009
Gm8777 13 50885270 to 50891424 6154 + protein coding gene predicted gene 8777
Tssr4068 13 50885852 to 50885859 7 + TSS region transcription start site region 4068
1700048B10Rik 13 50913817 to 50934152 20335 - lncRNA gene RIKEN cDNA 1700048B10 gene
Tssr122498 13 50934147 to 50934186 39 - TSS region transcription start site region 122498
Gm9702 13 50936043 to 50937246 1203 - pseudogene predicted gene 9702
Tssr119744 13 50950180 to 50950189 9 + TSS region transcription start site region 119744
Gm8779 13 50950222 to 50951017 795 + pseudogene predicted gene 8779
Gm32613 13 50981488 to 50991416 9928 - lncRNA gene predicted gene, 32613
Tssr122499 13 50991327 to 50991337 10 - TSS region transcription start site region 122499
Tssr122500 13 50991355 to 50991376 21 - TSS region transcription start site region 122500
D13Mit166 13 51013133 to 51013330 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 166
Gm22199 13 51014086 to 51014211 125 + unclassified non-coding RNA gene predicted gene, 22199