Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:49682062-51144576

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5587 13 49681901 to 49682520 619 CpG island CpG island 5587
Tssr119732 13 49682118 to 49682169 51 + TSS region transcription start site region 119732
Iars 13 49682130 to 49734267 52137 + protein coding gene isoleucine-tRNA synthetase
Tssr119733 13 49682210 to 49682221 11 + TSS region transcription start site region 119733
Gm25394 13 49684301 to 49684433 132 + snoRNA gene predicted gene, 25394
Gm23482 13 49714119 to 49714240 121 + snoRNA gene predicted gene, 23482
Tssr119734 13 49731473 to 49731492 19 + TSS region transcription start site region 119734
Tssr119735 13 49732444 to 49732464 20 + TSS region transcription start site region 119735
Gm19334 13 49750462 to 49752536 2074 + protein coding gene predicted gene, 19334
Cpgi5588 13 49762431 to 49762684 253 CpG island CpG island 5588
Tssr119736 13 49762472 to 49762487 15 + TSS region transcription start site region 119736
Gm270 13 49764328 to 49765303 975 + protein coding gene predicted gene 270
Tssr119737 13 49766330 to 49766346 16 + TSS region transcription start site region 119737
Gm30302 13 49784742 to 49790401 5659 - protein coding gene predicted gene, 30302
Gm47977 13 49784981 to 49787292 2311 + antisense lncRNA gene predicted gene, 47977
Tssr122492 13 49790241 to 49790244 3 - TSS region transcription start site region 122492
Gm7251 13 49804944 to 49805952 1008 - pseudogene predicted pseudogene 7251
Tssr119738 13 49814741 to 49814753 12 + TSS region transcription start site region 119738
Tssr119739 13 49818590 to 49818594 4 + TSS region transcription start site region 119739
Gm272 13 49820728 to 49821646 918 + protein coding gene predicted gene 272
D13Mit278 13 49831810 to 49831923 113 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 278
Gm8672 13 49861669 to 49864129 2460 - protein coding gene predicted gene 8672
D13Mit1000 13 49880002 to 49880119 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1000
Gm19011 13 49882957 to 49883764 807 + pseudogene predicted gene, 19011
Gm48009 13 49890423 to 49892868 2445 - pseudogene predicted gene, 48009
Gm8674 13 49898842 to 49902468 3626 - protein coding gene predicted gene 8674
Tssr122493 13 49904627 to 49904630 3 - TSS region transcription start site region 122493
Gm10784 13 49945096 to 49945333 237 - pseudogene predicted pseudogene 10784
Gm48051 13 49970001 to 49974260 4259 + lincRNA gene predicted gene, 48051
Tssr4067 13 49970006 to 49970024 18 + TSS region transcription start site region 4067
Gm17611 13 49976258 to 49977074 816 - protein coding gene predicted gene, 17611
Gm6554 13 50000347 to 50002258 1911 - pseudogene predicted gene 6554
Gm30520 13 50008262 to 50052848 44586 + lncRNA gene predicted gene, 30520
Gm48052 13 50049004 to 50051005 2001 - pseudogene predicted gene, 48052
LOC667541 13 50056441 to 50058385 1944 - pseudogene hypothetical LOC667541
Gm8700 13 50099026 to 50104045 5019 - protein coding gene predicted gene 8700
Gm24300 13 50118006 to 50118114 108 + miRNA gene predicted gene, 24300
Gm48054 13 50133670 to 50134510 840 - pseudogene predicted gene, 48054
4933433N18Rik 13 50137069 to 50146670 9601 + lincRNA gene RIKEN cDNA 4933433N18 gene
Gm19470 13 50161821 to 50163398 1577 - protein coding gene predicted gene, 19470
Gm47412 13 50165573 to 50167849 2276 - pseudogene predicted gene, 47412
Gm19484 13 50195183 to 50198131 2948 + pseudogene predicted gene, 19484
Gm38453 13 50197941 to 50201627 3686 + pseudogene predicted gene, 38453
Gm2645 13 50207542 to 50208088 546 - pseudogene predicted gene 2645
Gm31217 13 50218358 to 50228101 9743 + lncRNA gene predicted gene, 31217
Gm29769 13 50235111 to 50238756 3645 - pseudogene predicted gene, 29769
Gm47413 13 50241709 to 50241957 248 + pseudogene predicted gene, 47413
Gm906 13 50245181 to 50250308 5127 - protein coding gene predicted gene 906
2310081J21Rik 13 50261815 to 50262869 1054 + lncRNA gene RIKEN cDNA 2310081J21 gene
Gm24017 13 50262394 to 50262502 108 + miRNA gene predicted gene, 24017
Gm31126 13 50267976 to 50276670 8694 + lincRNA gene predicted gene, 31126
D13Mit246a 13 50289804 to 50289987 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246a
Gm9699 13 50291081 to 50293188 2107 - pseudogene predicted gene 9699
Gm46384 13 50300800 to 50302602 1802 - pseudogene predicted gene, 46384
Gm46385 13 50300899 to 50342216 41317 - pseudogene predicted gene, 46385
Gm8739 13 50343611 to 50344161 550 - antisense lncRNA gene predicted gene 8739
Gm19536 13 50399335 to 50400423 1088 - protein coding gene predicted gene, 19536
Gm8742 13 50412062 to 50414576 2514 - pseudogene predicted gene 8742
Cpgi5589 13 50417714 to 50418214 500 CpG island CpG island 5589
Tssr119740 13 50417856 to 50417872 16 + TSS region transcription start site region 119740
Fbxw17 13 50417864 to 50433780 15916 + protein coding gene F-box and WD-40 domain protein 17
Tssr119741 13 50417874 to 50417912 38 + TSS region transcription start site region 119741
Tssr119742 13 50417925 to 50417932 7 + TSS region transcription start site region 119742
Tssr119743 13 50422609 to 50422616 7 + TSS region transcription start site region 119743
Gm47429 13 50443408 to 50443912 504 - protein coding gene predicted gene, 47429
Tssr122494 13 50443850 to 50443860 10 - TSS region transcription start site region 122494
Tssr122495 13 50443867 to 50443894 27 - TSS region transcription start site region 122495
Tssr122496 13 50443910 to 50443914 4 - TSS region transcription start site region 122496
Gm40946 13 50448942 to 50465268 16326 - lncRNA gene predicted gene, 40946
Cpgi5590 13 50464843 to 50465103 260 CpG island CpG island 5590
Nutm2 13 50467307 to 50475355 8048 + protein coding gene NUT family member 2
Gm7259 13 50490585 to 50491435 850 + pseudogene predicted gene 7259
Gm31835 13 50516647 to 50539528 22881 - lncRNA gene predicted gene, 31835
Mir683-1 13 50544626 to 50544734 108 - miRNA gene microRNA 683-1
Gm20789 13 50561473 to 50570876 9403 + pseudogene predicted gene, 20789
D13Mit246b 13 50572643 to 50572816 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246b
Gm31712 13 50572802 to 50595600 22798 - lncRNA gene predicted gene, 31712
Tssr122497 13 50595494 to 50595531 37 - TSS region transcription start site region 122497
Mir683-2 13 50600972 to 50601080 108 - miRNA gene microRNA 683-2
Gm31890 13 50610205 to 50613242 3037 - pseudogene predicted gene, 31890
Gm29777 13 50610733 to 50618160 7427 - pseudogene predicted gene, 29777
Gm904 13 50643228 to 50645838 2610 + protein coding gene predicted gene 904
Gm19663 13 50647276 to 50649746 2470 + pseudogene predicted gene, 19663
Gm32038 13 50651705 to 50673401 21696 - lncRNA gene predicted gene, 32038
Gm23952 13 50679537 to 50679645 108 - miRNA gene predicted gene, 23952
Gm8765 13 50698312 to 50703435 5123 + protein coding gene predicted gene 8765
4930518P08Rik 13 50753393 to 50765248 11855 - lincRNA gene RIKEN cDNA 4930518P08 gene
Gm17761 13 50758754 to 50759668 914 + pseudogene predicted gene, 17761
Gm2654 13 50786144 to 50787735 1591 + pseudogene predicted gene 2654
Gm40947 13 50854923 to 50878273 23350 - lncRNA gene predicted gene, 40947
Gm19009 13 50859346 to 50860156 810 - pseudogene predicted gene, 19009
Gm8777 13 50885270 to 50891424 6154 + protein coding gene predicted gene 8777
Tssr4068 13 50885852 to 50885859 7 + TSS region transcription start site region 4068
1700048B10Rik 13 50913817 to 50934152 20335 - lncRNA gene RIKEN cDNA 1700048B10 gene
Tssr122498 13 50934147 to 50934186 39 - TSS region transcription start site region 122498
Gm9702 13 50936043 to 50937246 1203 - pseudogene predicted gene 9702
Tssr119744 13 50950180 to 50950189 9 + TSS region transcription start site region 119744
Gm8779 13 50950222 to 50951017 795 + pseudogene predicted gene 8779
Gm32613 13 50981488 to 50991416 9928 - lncRNA gene predicted gene, 32613
Tssr122499 13 50991327 to 50991337 10 - TSS region transcription start site region 122499
Tssr122500 13 50991355 to 50991376 21 - TSS region transcription start site region 122500
D13Mit166 13 51013133 to 51013330 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 166
Gm22199 13 51014086 to 51014211 125 + unclassified non-coding RNA gene predicted gene, 22199
Tssr122501 13 51015179 to 51015184 5 - TSS region transcription start site region 122501
Tssr122502 13 51026410 to 51026454 44 - TSS region transcription start site region 122502
9430083A17Rik 13 51097738 to 51100727 2989 - lncRNA gene RIKEN cDNA 9430083A17 gene
Cpgi5591 13 51099971 to 51101770 1799 CpG island CpG island 5591
Tssr119745 13 51100473 to 51100492 19 + TSS region transcription start site region 119745
Tssr119746 13 51100494 to 51100515 21 + TSS region transcription start site region 119746
Tssr119747 13 51100781 to 51100799 18 + TSS region transcription start site region 119747
Tssr119748 13 51100810 to 51100933 123 + TSS region transcription start site region 119748
Spin1 13 51100880 to 51152546 51666 + protein coding gene spindlin 1
Tssr119749 13 51101203 to 51101231 28 + TSS region transcription start site region 119749
Tssr122503 13 51101509 to 51101530 21 - TSS region transcription start site region 122503
Tssr119750 13 51132279 to 51132283 4 + TSS region transcription start site region 119750
Tssr119751 13 51137681 to 51137685 4 + TSS region transcription start site region 119751