Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:49645006-50295024

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cenpp 13 49464023 to 49652785 188762 - protein coding gene centromere protein P
Cpgi5586 13 49652405 to 49653565 1160 CpG island CpG island 5586
Tssr122489 13 49652714 to 49652754 40 - TSS region transcription start site region 122489
Tssr122490 13 49652756 to 49652781 25 - TSS region transcription start site region 122490
Tssr122491 13 49652889 to 49652914 25 - TSS region transcription start site region 122491
Tssr119728 13 49653067 to 49653097 30 + TSS region transcription start site region 119728
Nol8 13 49653078 to 49679016 25938 + protein coding gene nucleolar protein 8
Tssr119729 13 49653098 to 49653136 38 + TSS region transcription start site region 119729
Tssr119730 13 49653297 to 49653367 70 + TSS region transcription start site region 119730
Tssr119731 13 49654400 to 49654418 18 + TSS region transcription start site region 119731
Cpgi5587 13 49681901 to 49682520 619 CpG island CpG island 5587
Tssr119732 13 49682118 to 49682169 51 + TSS region transcription start site region 119732
Iars 13 49682130 to 49734267 52137 + protein coding gene isoleucine-tRNA synthetase
Tssr119733 13 49682210 to 49682221 11 + TSS region transcription start site region 119733
Gm25394 13 49684301 to 49684433 132 + snoRNA gene predicted gene, 25394
Gm23482 13 49714119 to 49714240 121 + snoRNA gene predicted gene, 23482
Tssr119734 13 49731473 to 49731492 19 + TSS region transcription start site region 119734
Tssr119735 13 49732444 to 49732464 20 + TSS region transcription start site region 119735
Gm19334 13 49750462 to 49752536 2074 + protein coding gene predicted gene, 19334
Cpgi5588 13 49762431 to 49762684 253 CpG island CpG island 5588
Tssr119736 13 49762472 to 49762487 15 + TSS region transcription start site region 119736
Gm270 13 49764328 to 49765303 975 + protein coding gene predicted gene 270
Tssr119737 13 49766330 to 49766346 16 + TSS region transcription start site region 119737
Gm30302 13 49784742 to 49790401 5659 - protein coding gene predicted gene, 30302
Gm47977 13 49784981 to 49787292 2311 + antisense lncRNA gene predicted gene, 47977
Tssr122492 13 49790241 to 49790244 3 - TSS region transcription start site region 122492
Gm7251 13 49804944 to 49805952 1008 - pseudogene predicted pseudogene 7251
Tssr119738 13 49814741 to 49814753 12 + TSS region transcription start site region 119738
Tssr119739 13 49818590 to 49818594 4 + TSS region transcription start site region 119739
Gm272 13 49820728 to 49821646 918 + protein coding gene predicted gene 272
D13Mit278 13 49831810 to 49831923 113 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 278
Gm8672 13 49861669 to 49864129 2460 - protein coding gene predicted gene 8672
D13Mit1000 13 49880002 to 49880119 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1000
Gm19011 13 49882957 to 49883764 807 + pseudogene predicted gene, 19011
Gm48009 13 49890423 to 49892868 2445 - pseudogene predicted gene, 48009
Gm8674 13 49898842 to 49902468 3626 - protein coding gene predicted gene 8674
Tssr122493 13 49904627 to 49904630 3 - TSS region transcription start site region 122493
Gm10784 13 49945096 to 49945333 237 - pseudogene predicted pseudogene 10784
Gm48051 13 49970001 to 49974260 4259 + lincRNA gene predicted gene, 48051
Tssr4067 13 49970006 to 49970024 18 + TSS region transcription start site region 4067
Gm17611 13 49976258 to 49977074 816 - protein coding gene predicted gene, 17611
Gm6554 13 50000347 to 50002258 1911 - pseudogene predicted gene 6554
Gm30520 13 50008262 to 50052848 44586 + lncRNA gene predicted gene, 30520
Gm48052 13 50049004 to 50051005 2001 - pseudogene predicted gene, 48052
LOC667541 13 50056441 to 50058385 1944 - pseudogene hypothetical LOC667541
Gm8700 13 50099026 to 50104045 5019 - protein coding gene predicted gene 8700
Gm24300 13 50118006 to 50118114 108 + miRNA gene predicted gene, 24300
Gm48054 13 50133670 to 50134510 840 - pseudogene predicted gene, 48054
4933433N18Rik 13 50137069 to 50146670 9601 + lincRNA gene RIKEN cDNA 4933433N18 gene
Gm19470 13 50161821 to 50163398 1577 - protein coding gene predicted gene, 19470
Gm47412 13 50165573 to 50167849 2276 - pseudogene predicted gene, 47412
Gm19484 13 50195183 to 50198131 2948 + pseudogene predicted gene, 19484
Gm38453 13 50197941 to 50201627 3686 + pseudogene predicted gene, 38453
Gm2645 13 50207542 to 50208088 546 - pseudogene predicted gene 2645
Gm31217 13 50218358 to 50228101 9743 + lncRNA gene predicted gene, 31217
Gm29769 13 50235111 to 50238756 3645 - pseudogene predicted gene, 29769
Gm47413 13 50241709 to 50241957 248 + pseudogene predicted gene, 47413
Gm906 13 50245181 to 50250308 5127 - protein coding gene predicted gene 906
2310081J21Rik 13 50261815 to 50262869 1054 + lncRNA gene RIKEN cDNA 2310081J21 gene
Gm24017 13 50262394 to 50262502 108 + miRNA gene predicted gene, 24017
Gm31126 13 50267976 to 50276670 8694 + lincRNA gene predicted gene, 31126
D13Mit246a 13 50289804 to 50289987 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246a
Gm9699 13 50291081 to 50293188 2107 - pseudogene predicted gene 9699