Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:49191585-49537026

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ninj1 13 49187547 to 49196251 8704 + protein coding gene ninjurin 1
Tssr122453 13 49191694 to 49191718 24 - TSS region transcription start site region 122453
Tssr119687 13 49193725 to 49193760 35 + TSS region transcription start site region 119687
Tssr119688 13 49193861 to 49193917 56 + TSS region transcription start site region 119688
Tssr119689 13 49195684 to 49195699 15 + TSS region transcription start site region 119689
Tssr119690 13 49195710 to 49195738 28 + TSS region transcription start site region 119690
Tssr119691 13 49195928 to 49195953 25 + TSS region transcription start site region 119691
Tssr122454 13 49195969 to 49195988 19 - TSS region transcription start site region 122454
Tssr122455 13 49195992 to 49196007 15 - TSS region transcription start site region 122455
Tssr119692 13 49197027 to 49197033 6 + TSS region transcription start site region 119692
Tssr119693 13 49197059 to 49197068 9 + TSS region transcription start site region 119693
Tssr122456 13 49200526 to 49200531 5 - TSS region transcription start site region 122456
Tssr122457 13 49200595 to 49200608 13 - TSS region transcription start site region 122457
Tssr122458 13 49200719 to 49200736 17 - TSS region transcription start site region 122458
Card19 13 49202950 to 49216037 13087 - protein coding gene caspase recruitment domain family, member 19
Tssr122459 13 49204066 to 49204109 43 - TSS region transcription start site region 122459
Tssr122460 13 49205428 to 49205442 14 - TSS region transcription start site region 122460
Tssr122461 13 49205457 to 49205483 26 - TSS region transcription start site region 122461
Tssr122462 13 49205507 to 49205519 12 - TSS region transcription start site region 122462
Tssr122463 13 49208039 to 49208053 14 - TSS region transcription start site region 122463
Tssr122464 13 49208055 to 49208069 14 - TSS region transcription start site region 122464
Tssr122465 13 49210285 to 49210310 25 - TSS region transcription start site region 122465
Tssr122466 13 49212361 to 49212373 12 - TSS region transcription start site region 122466
Tssr119694 13 49213890 to 49213902 12 + TSS region transcription start site region 119694
Cpgi5581 13 49215438 to 49216416 978 CpG island CpG island 5581
Tssr119695 13 49215637 to 49215654 17 + TSS region transcription start site region 119695
Tssr119696 13 49215660 to 49215676 16 + TSS region transcription start site region 119696
Tssr4064 13 49215836 to 49215847 11 - TSS region transcription start site region 4064
Tssr122467 13 49215858 to 49215903 45 - TSS region transcription start site region 122467
Tssr4065 13 49215934 to 49215976 42 - TSS region transcription start site region 4065
Tssr122468 13 49215978 to 49216052 74 - TSS region transcription start site region 122468
Tssr119697 13 49216156 to 49216202 46 + TSS region transcription start site region 119697
Tssr4066 13 49223303 to 49223305 2 + TSS region transcription start site region 4066
Susd3 13 49230690 to 49248706 18016 - protein coding gene sushi domain containing 3
Tssr122469 13 49237599 to 49237607 8 - TSS region transcription start site region 122469
Tssr122470 13 49240641 to 49240674 33 - TSS region transcription start site region 122470
Tssr122471 13 49242862 to 49242878 16 - TSS region transcription start site region 122471
Tssr122472 13 49242901 to 49242923 22 - TSS region transcription start site region 122472
Tssr122473 13 49242925 to 49242940 15 - TSS region transcription start site region 122473
Tssr119698 13 49247471 to 49247472 1 + TSS region transcription start site region 119698
Cpgi5582 13 49247475 to 49248415 940 CpG island CpG island 5582
Tssr122474 13 49248120 to 49248140 20 - TSS region transcription start site region 122474
Tssr122475 13 49248146 to 49248168 22 - TSS region transcription start site region 122475
Tssr122476 13 49248182 to 49248184 2 - TSS region transcription start site region 122476
Tssr122477 13 49248713 to 49248725 12 - TSS region transcription start site region 122477
E030007A22Rik 13 49259043 to 49261792 2749 lncRNA gene RIKEN cDNA E030007A22 gene
Fgd3 13 49263110 to 49320469 57359 - protein coding gene FYVE, RhoGEF and PH domain containing 3
Tssr122478 13 49287729 to 49287746 17 - TSS region transcription start site region 122478
Tssr122479 13 49287913 to 49287957 44 - TSS region transcription start site region 122479
Tssr122480 13 49298649 to 49298657 8 - TSS region transcription start site region 122480
Tssr122481 13 49298678 to 49298697 19 - TSS region transcription start site region 122481
Tssr122482 13 49298802 to 49298813 11 - TSS region transcription start site region 122482
Tssr119699 13 49298959 to 49298961 2 + TSS region transcription start site region 119699
Tssr119700 13 49307914 to 49307937 23 + TSS region transcription start site region 119700
Tssr122483 13 49308986 to 49309001 15 - TSS region transcription start site region 122483
Cpgi5583 13 49309098 to 49309393 295 CpG island CpG island 5583
Tssr122484 13 49309198 to 49309214 16 - TSS region transcription start site region 122484
Tssr122485 13 49309217 to 49309257 40 - TSS region transcription start site region 122485
Tssr122486 13 49320199 to 49320218 19 - TSS region transcription start site region 122486
Tssr122487 13 49320219 to 49320289 70 - TSS region transcription start site region 122487
1700129O19Rik 13 49340855 to 49341375 520 unclassified gene RIKEN cDNA 1700129O19 gene
Cpgi5584 13 49340903 to 49342314 1411 CpG island CpG island 5584
Tssr119701 13 49341452 to 49341463 11 + TSS region transcription start site region 119701
Tssr119702 13 49341531 to 49341543 12 + TSS region transcription start site region 119702
Tssr119703 13 49341549 to 49341623 74 + TSS region transcription start site region 119703
Bicd2 13 49341585 to 49387026 45441 + protein coding gene BICD cargo adaptor 2
Gm46413 13 49391565 to 49407347 15782 - lncRNA gene predicted gene, 46413
Cpgi5585 13 49420626 to 49421999 1373 CpG island CpG island 5585
Ippk 13 49421190 to 49463060 41870 + protein coding gene inositol 1,3,4,5,6-pentakisphosphate 2-kinase
Tssr119704 13 49421229 to 49421303 74 + TSS region transcription start site region 119704
Cenpp 13 49464023 to 49652785 188762 - protein coding gene centromere protein P
Tssr119705 13 49493595 to 49493606 11 + TSS region transcription start site region 119705
Tssr119706 13 49493621 to 49493643 22 + TSS region transcription start site region 119706
Tes3-ps 13 49493652 to 49496389 2737 + pseudogene testis derived transcript 3, pseudogene
Tssr119707 13 49504774 to 49504816 42 + TSS region transcription start site region 119707
Ecm2 13 49504810 to 49532789 27979 + protein coding gene extracellular matrix protein 2, female organ and adipocyte specific
Tssr119708 13 49504852 to 49504880 28 + TSS region transcription start site region 119708
Tssr119709 13 49504885 to 49504910 25 + TSS region transcription start site region 119709
Tssr119710 13 49504943 to 49504958 15 + TSS region transcription start site region 119710