Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:49190573-51142849

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229 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ninj1 13 49187547 to 49196251 8704 + protein coding gene ninjurin 1
Tssr122452 13 49190793 to 49190803 10 - TSS region transcription start site region 122452
Tssr119685 13 49190953 to 49190959 6 + TSS region transcription start site region 119685
Tssr119686 13 49191071 to 49191084 13 + TSS region transcription start site region 119686
Tssr122453 13 49191694 to 49191718 24 - TSS region transcription start site region 122453
Tssr119687 13 49193725 to 49193760 35 + TSS region transcription start site region 119687
Tssr119688 13 49193861 to 49193917 56 + TSS region transcription start site region 119688
Tssr119689 13 49195684 to 49195699 15 + TSS region transcription start site region 119689
Tssr119690 13 49195710 to 49195738 28 + TSS region transcription start site region 119690
Tssr119691 13 49195928 to 49195953 25 + TSS region transcription start site region 119691
Tssr122454 13 49195969 to 49195988 19 - TSS region transcription start site region 122454
Tssr122455 13 49195992 to 49196007 15 - TSS region transcription start site region 122455
Tssr119692 13 49197027 to 49197033 6 + TSS region transcription start site region 119692
Tssr119693 13 49197059 to 49197068 9 + TSS region transcription start site region 119693
Tssr122456 13 49200526 to 49200531 5 - TSS region transcription start site region 122456
Tssr122457 13 49200595 to 49200608 13 - TSS region transcription start site region 122457
Tssr122458 13 49200719 to 49200736 17 - TSS region transcription start site region 122458
Card19 13 49202950 to 49216037 13087 - protein coding gene caspase recruitment domain family, member 19
Tssr122459 13 49204066 to 49204109 43 - TSS region transcription start site region 122459
Tssr122460 13 49205428 to 49205442 14 - TSS region transcription start site region 122460
Tssr122461 13 49205457 to 49205483 26 - TSS region transcription start site region 122461
Tssr122462 13 49205507 to 49205519 12 - TSS region transcription start site region 122462
Tssr122463 13 49208039 to 49208053 14 - TSS region transcription start site region 122463
Tssr122464 13 49208055 to 49208069 14 - TSS region transcription start site region 122464
Tssr122465 13 49210285 to 49210310 25 - TSS region transcription start site region 122465
Tssr122466 13 49212361 to 49212373 12 - TSS region transcription start site region 122466
Tssr119694 13 49213890 to 49213902 12 + TSS region transcription start site region 119694
Cpgi5581 13 49215438 to 49216416 978 CpG island CpG island 5581
Tssr119695 13 49215637 to 49215654 17 + TSS region transcription start site region 119695
Tssr119696 13 49215660 to 49215676 16 + TSS region transcription start site region 119696
Tssr4064 13 49215836 to 49215847 11 - TSS region transcription start site region 4064
Tssr122467 13 49215858 to 49215903 45 - TSS region transcription start site region 122467
Tssr4065 13 49215934 to 49215976 42 - TSS region transcription start site region 4065
Tssr122468 13 49215978 to 49216052 74 - TSS region transcription start site region 122468
Tssr119697 13 49216156 to 49216202 46 + TSS region transcription start site region 119697
Tssr4066 13 49223303 to 49223305 2 + TSS region transcription start site region 4066
Susd3 13 49230690 to 49248706 18016 - protein coding gene sushi domain containing 3
Tssr122469 13 49237599 to 49237607 8 - TSS region transcription start site region 122469
Tssr122470 13 49240641 to 49240674 33 - TSS region transcription start site region 122470
Tssr122471 13 49242862 to 49242878 16 - TSS region transcription start site region 122471
Tssr122472 13 49242901 to 49242923 22 - TSS region transcription start site region 122472
Tssr122473 13 49242925 to 49242940 15 - TSS region transcription start site region 122473
Tssr119698 13 49247471 to 49247472 1 + TSS region transcription start site region 119698
Cpgi5582 13 49247475 to 49248415 940 CpG island CpG island 5582
Tssr122474 13 49248120 to 49248140 20 - TSS region transcription start site region 122474
Tssr122475 13 49248146 to 49248168 22 - TSS region transcription start site region 122475
Tssr122476 13 49248182 to 49248184 2 - TSS region transcription start site region 122476
Tssr122477 13 49248713 to 49248725 12 - TSS region transcription start site region 122477
E030007A22Rik 13 49259043 to 49261792 2749 lncRNA gene RIKEN cDNA E030007A22 gene
Fgd3 13 49263110 to 49320469 57359 - protein coding gene FYVE, RhoGEF and PH domain containing 3
Tssr122478 13 49287729 to 49287746 17 - TSS region transcription start site region 122478
Tssr122479 13 49287913 to 49287957 44 - TSS region transcription start site region 122479
Tssr122480 13 49298649 to 49298657 8 - TSS region transcription start site region 122480
Tssr122481 13 49298678 to 49298697 19 - TSS region transcription start site region 122481
Tssr122482 13 49298802 to 49298813 11 - TSS region transcription start site region 122482
Tssr119699 13 49298959 to 49298961 2 + TSS region transcription start site region 119699
Tssr119700 13 49307914 to 49307937 23 + TSS region transcription start site region 119700
Tssr122483 13 49308986 to 49309001 15 - TSS region transcription start site region 122483
Cpgi5583 13 49309098 to 49309393 295 CpG island CpG island 5583
Tssr122484 13 49309198 to 49309214 16 - TSS region transcription start site region 122484
Tssr122485 13 49309217 to 49309257 40 - TSS region transcription start site region 122485
Tssr122486 13 49320199 to 49320218 19 - TSS region transcription start site region 122486
Tssr122487 13 49320219 to 49320289 70 - TSS region transcription start site region 122487
1700129O19Rik 13 49340855 to 49341375 520 unclassified gene RIKEN cDNA 1700129O19 gene
Cpgi5584 13 49340903 to 49342314 1411 CpG island CpG island 5584
Tssr119701 13 49341452 to 49341463 11 + TSS region transcription start site region 119701
Tssr119702 13 49341531 to 49341543 12 + TSS region transcription start site region 119702
Tssr119703 13 49341549 to 49341623 74 + TSS region transcription start site region 119703
Bicd2 13 49341585 to 49387026 45441 + protein coding gene BICD cargo adaptor 2
Gm46413 13 49391565 to 49407347 15782 - lncRNA gene predicted gene, 46413
Cpgi5585 13 49420626 to 49421999 1373 CpG island CpG island 5585
Ippk 13 49421190 to 49463060 41870 + protein coding gene inositol 1,3,4,5,6-pentakisphosphate 2-kinase
Tssr119704 13 49421229 to 49421303 74 + TSS region transcription start site region 119704
Cenpp 13 49464023 to 49652785 188762 - protein coding gene centromere protein P
Tssr119705 13 49493595 to 49493606 11 + TSS region transcription start site region 119705
Tssr119706 13 49493621 to 49493643 22 + TSS region transcription start site region 119706
Tes3-ps 13 49493652 to 49496389 2737 + pseudogene testis derived transcript 3, pseudogene
Tssr119707 13 49504774 to 49504816 42 + TSS region transcription start site region 119707
Ecm2 13 49504810 to 49532789 27979 + protein coding gene extracellular matrix protein 2, female organ and adipocyte specific
Tssr119708 13 49504852 to 49504880 28 + TSS region transcription start site region 119708
Tssr119709 13 49504885 to 49504910 25 + TSS region transcription start site region 119709
Tssr119710 13 49504943 to 49504958 15 + TSS region transcription start site region 119710
Aspn 13 49544443 to 49567565 23122 + protein coding gene asporin
Tssr119711 13 49544479 to 49544533 54 + TSS region transcription start site region 119711
Tssr119712 13 49544625 to 49544636 11 + TSS region transcription start site region 119712
Tssr119713 13 49548580 to 49548601 21 + TSS region transcription start site region 119713
Omd 13 49582462 to 49592822 10360 + protein coding gene osteomodulin
Tssr119714 13 49582541 to 49582578 37 + TSS region transcription start site region 119714
Tssr119715 13 49582623 to 49582643 20 + TSS region transcription start site region 119715
Tssr119716 13 49582668 to 49582707 39 + TSS region transcription start site region 119716
Tssr119717 13 49582708 to 49582734 26 + TSS region transcription start site region 119717
Tssr119718 13 49582745 to 49582778 33 + TSS region transcription start site region 119718
Tssr122488 13 49593960 to 49593965 5 - TSS region transcription start site region 122488
Tssr119719 13 49608005 to 49608024 19 + TSS region transcription start site region 119719
Tssr119720 13 49608030 to 49608063 33 + TSS region transcription start site region 119720
Ogn 13 49608071 to 49624500 16429 + protein coding gene osteoglycin
Tssr119721 13 49609033 to 49609044 11 + TSS region transcription start site region 119721
Tssr119722 13 49609055 to 49609096 41 + TSS region transcription start site region 119722
Tssr119723 13 49609099 to 49609113 14 + TSS region transcription start site region 119723
Tssr119724 13 49609127 to 49609170 43 + TSS region transcription start site region 119724
Tssr119725 13 49622901 to 49622913 12 + TSS region transcription start site region 119725
Tssr119726 13 49622966 to 49622979 13 + TSS region transcription start site region 119726
Tssr119727 13 49623529 to 49623534 5 + TSS region transcription start site region 119727
D13Mit182 13 49627899 to 49628048 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 182
Cpgi5586 13 49652405 to 49653565 1160 CpG island CpG island 5586
Tssr122489 13 49652714 to 49652754 40 - TSS region transcription start site region 122489
Tssr122490 13 49652756 to 49652781 25 - TSS region transcription start site region 122490
Tssr122491 13 49652889 to 49652914 25 - TSS region transcription start site region 122491
Tssr119728 13 49653067 to 49653097 30 + TSS region transcription start site region 119728
Nol8 13 49653078 to 49679016 25938 + protein coding gene nucleolar protein 8
Tssr119729 13 49653098 to 49653136 38 + TSS region transcription start site region 119729
Tssr119730 13 49653297 to 49653367 70 + TSS region transcription start site region 119730
Tssr119731 13 49654400 to 49654418 18 + TSS region transcription start site region 119731
Cpgi5587 13 49681901 to 49682520 619 CpG island CpG island 5587
Tssr119732 13 49682118 to 49682169 51 + TSS region transcription start site region 119732
Iars 13 49682130 to 49734267 52137 + protein coding gene isoleucine-tRNA synthetase
Tssr119733 13 49682210 to 49682221 11 + TSS region transcription start site region 119733
Gm25394 13 49684301 to 49684433 132 + snoRNA gene predicted gene, 25394
Gm23482 13 49714119 to 49714240 121 + snoRNA gene predicted gene, 23482
Tssr119734 13 49731473 to 49731492 19 + TSS region transcription start site region 119734
Tssr119735 13 49732444 to 49732464 20 + TSS region transcription start site region 119735
Gm19334 13 49750462 to 49752536 2074 + protein coding gene predicted gene, 19334
Cpgi5588 13 49762431 to 49762684 253 CpG island CpG island 5588
Tssr119736 13 49762472 to 49762487 15 + TSS region transcription start site region 119736
Gm270 13 49764328 to 49765303 975 + protein coding gene predicted gene 270
Tssr119737 13 49766330 to 49766346 16 + TSS region transcription start site region 119737
Gm30302 13 49784742 to 49790401 5659 - protein coding gene predicted gene, 30302
Gm47977 13 49784981 to 49787292 2311 + antisense lncRNA gene predicted gene, 47977
Tssr122492 13 49790241 to 49790244 3 - TSS region transcription start site region 122492
Gm7251 13 49804944 to 49805952 1008 - pseudogene predicted pseudogene 7251
Tssr119738 13 49814741 to 49814753 12 + TSS region transcription start site region 119738
Tssr119739 13 49818590 to 49818594 4 + TSS region transcription start site region 119739
Gm272 13 49820728 to 49821646 918 + protein coding gene predicted gene 272
D13Mit278 13 49831810 to 49831923 113 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 278
Gm8672 13 49861669 to 49864129 2460 - protein coding gene predicted gene 8672
D13Mit1000 13 49880002 to 49880119 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1000
Gm19011 13 49882957 to 49883764 807 + pseudogene predicted gene, 19011
Gm48009 13 49890423 to 49892868 2445 - pseudogene predicted gene, 48009
Gm8674 13 49898842 to 49902468 3626 - protein coding gene predicted gene 8674
Tssr122493 13 49904627 to 49904630 3 - TSS region transcription start site region 122493
Gm10784 13 49945096 to 49945333 237 - pseudogene predicted pseudogene 10784
Gm48051 13 49970001 to 49974260 4259 + lincRNA gene predicted gene, 48051
Tssr4067 13 49970006 to 49970024 18 + TSS region transcription start site region 4067
Gm17611 13 49976258 to 49977074 816 - protein coding gene predicted gene, 17611
Gm6554 13 50000347 to 50002258 1911 - pseudogene predicted gene 6554
Gm30520 13 50008262 to 50052848 44586 + lncRNA gene predicted gene, 30520
Gm48052 13 50049004 to 50051005 2001 - pseudogene predicted gene, 48052
LOC667541 13 50056441 to 50058385 1944 - pseudogene hypothetical LOC667541
Gm8700 13 50099026 to 50104045 5019 - protein coding gene predicted gene 8700
Gm24300 13 50118006 to 50118114 108 + miRNA gene predicted gene, 24300
Gm48054 13 50133670 to 50134510 840 - pseudogene predicted gene, 48054
4933433N18Rik 13 50137069 to 50146670 9601 + lincRNA gene RIKEN cDNA 4933433N18 gene
Gm19470 13 50161821 to 50163398 1577 - protein coding gene predicted gene, 19470
Gm47412 13 50165573 to 50167849 2276 - pseudogene predicted gene, 47412
Gm19484 13 50195183 to 50198131 2948 + pseudogene predicted gene, 19484
Gm38453 13 50197941 to 50201627 3686 + pseudogene predicted gene, 38453
Gm2645 13 50207542 to 50208088 546 - pseudogene predicted gene 2645
Gm31217 13 50218358 to 50228101 9743 + lncRNA gene predicted gene, 31217
Gm29769 13 50235111 to 50238756 3645 - pseudogene predicted gene, 29769
Gm47413 13 50241709 to 50241957 248 + pseudogene predicted gene, 47413
Gm906 13 50245181 to 50250308 5127 - protein coding gene predicted gene 906
2310081J21Rik 13 50261815 to 50262869 1054 + lncRNA gene RIKEN cDNA 2310081J21 gene
Gm24017 13 50262394 to 50262502 108 + miRNA gene predicted gene, 24017
Gm31126 13 50267976 to 50276670 8694 + lincRNA gene predicted gene, 31126
D13Mit246a 13 50289804 to 50289987 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246a
Gm9699 13 50291081 to 50293188 2107 - pseudogene predicted gene 9699
Gm46384 13 50300800 to 50302602 1802 - pseudogene predicted gene, 46384
Gm46385 13 50300899 to 50342216 41317 - pseudogene predicted gene, 46385
Gm8739 13 50343611 to 50344161 550 - antisense lncRNA gene predicted gene 8739
Gm19536 13 50399335 to 50400423 1088 - protein coding gene predicted gene, 19536
Gm8742 13 50412062 to 50414576 2514 - pseudogene predicted gene 8742
Cpgi5589 13 50417714 to 50418214 500 CpG island CpG island 5589
Tssr119740 13 50417856 to 50417872 16 + TSS region transcription start site region 119740
Fbxw17 13 50417864 to 50433780 15916 + protein coding gene F-box and WD-40 domain protein 17
Tssr119741 13 50417874 to 50417912 38 + TSS region transcription start site region 119741
Tssr119742 13 50417925 to 50417932 7 + TSS region transcription start site region 119742
Tssr119743 13 50422609 to 50422616 7 + TSS region transcription start site region 119743
Gm47429 13 50443408 to 50443912 504 - protein coding gene predicted gene, 47429
Tssr122494 13 50443850 to 50443860 10 - TSS region transcription start site region 122494
Tssr122495 13 50443867 to 50443894 27 - TSS region transcription start site region 122495
Tssr122496 13 50443910 to 50443914 4 - TSS region transcription start site region 122496
Gm40946 13 50448942 to 50465268 16326 - lncRNA gene predicted gene, 40946
Cpgi5590 13 50464843 to 50465103 260 CpG island CpG island 5590
Nutm2 13 50467307 to 50475355 8048 + protein coding gene NUT family member 2
Gm7259 13 50490585 to 50491435 850 + pseudogene predicted gene 7259
Gm31835 13 50516647 to 50539528 22881 - lncRNA gene predicted gene, 31835
Mir683-1 13 50544626 to 50544734 108 - miRNA gene microRNA 683-1
Gm20789 13 50561473 to 50570876 9403 + pseudogene predicted gene, 20789
D13Mit246b 13 50572643 to 50572816 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246b
Gm31712 13 50572802 to 50595600 22798 - lncRNA gene predicted gene, 31712
Tssr122497 13 50595494 to 50595531 37 - TSS region transcription start site region 122497
Mir683-2 13 50600972 to 50601080 108 - miRNA gene microRNA 683-2
Gm31890 13 50610205 to 50613242 3037 - pseudogene predicted gene, 31890
Gm29777 13 50610733 to 50618160 7427 - pseudogene predicted gene, 29777
Gm904 13 50643228 to 50645838 2610 + protein coding gene predicted gene 904
Gm19663 13 50647276 to 50649746 2470 + pseudogene predicted gene, 19663
Gm32038 13 50651705 to 50673401 21696 - lncRNA gene predicted gene, 32038
Gm23952 13 50679537 to 50679645 108 - miRNA gene predicted gene, 23952
Gm8765 13 50698312 to 50703435 5123 + protein coding gene predicted gene 8765
4930518P08Rik 13 50753393 to 50765248 11855 - lincRNA gene RIKEN cDNA 4930518P08 gene