Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:49173146-49323168

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40943 13 49169808 to 49183825 14017 - lncRNA gene predicted gene, 40943
Tssr122440 13 49183719 to 49183732 13 - TSS region transcription start site region 122440
Tssr122441 13 49183789 to 49183800 11 - TSS region transcription start site region 122441
Tssr122442 13 49183848 to 49183857 9 - TSS region transcription start site region 122442
Tssr122443 13 49183928 to 49183957 29 - TSS region transcription start site region 122443
Tssr122444 13 49183968 to 49183975 7 - TSS region transcription start site region 122444
Cpgi5580 13 49186819 to 49188351 1532 CpG island CpG island 5580
Tssr119678 13 49187485 to 49187539 54 + TSS region transcription start site region 119678
Ninj1 13 49187547 to 49196251 8704 + protein coding gene ninjurin 1
Tssr122445 13 49187913 to 49187924 11 - TSS region transcription start site region 122445
Tssr122446 13 49187938 to 49187952 14 - TSS region transcription start site region 122446
Tssr122447 13 49187953 to 49187961 8 - TSS region transcription start site region 122447
Tssr122448 13 49187997 to 49188011 14 - TSS region transcription start site region 122448
Tssr122449 13 49188013 to 49188029 16 - TSS region transcription start site region 122449
Tssr119679 13 49188156 to 49188167 11 + TSS region transcription start site region 119679
Tssr119680 13 49188202 to 49188216 14 + TSS region transcription start site region 119680
Tssr119681 13 49188245 to 49188261 16 + TSS region transcription start site region 119681
Tssr119682 13 49188508 to 49188558 50 + TSS region transcription start site region 119682
Tssr122450 13 49190151 to 49190167 16 - TSS region transcription start site region 122450
Tssr122451 13 49190198 to 49190208 10 - TSS region transcription start site region 122451
Tssr119683 13 49190329 to 49190331 2 + TSS region transcription start site region 119683
Tssr119684 13 49190352 to 49190358 6 + TSS region transcription start site region 119684
Tssr122452 13 49190793 to 49190803 10 - TSS region transcription start site region 122452
Tssr119685 13 49190953 to 49190959 6 + TSS region transcription start site region 119685
Tssr119686 13 49191071 to 49191084 13 + TSS region transcription start site region 119686
Tssr122453 13 49191694 to 49191718 24 - TSS region transcription start site region 122453
Tssr119687 13 49193725 to 49193760 35 + TSS region transcription start site region 119687
Tssr119688 13 49193861 to 49193917 56 + TSS region transcription start site region 119688
Tssr119689 13 49195684 to 49195699 15 + TSS region transcription start site region 119689
Tssr119690 13 49195710 to 49195738 28 + TSS region transcription start site region 119690
Tssr119691 13 49195928 to 49195953 25 + TSS region transcription start site region 119691
Tssr122454 13 49195969 to 49195988 19 - TSS region transcription start site region 122454
Tssr122455 13 49195992 to 49196007 15 - TSS region transcription start site region 122455
Tssr119692 13 49197027 to 49197033 6 + TSS region transcription start site region 119692
Tssr119693 13 49197059 to 49197068 9 + TSS region transcription start site region 119693
Tssr122456 13 49200526 to 49200531 5 - TSS region transcription start site region 122456
Tssr122457 13 49200595 to 49200608 13 - TSS region transcription start site region 122457
Tssr122458 13 49200719 to 49200736 17 - TSS region transcription start site region 122458
Card19 13 49202950 to 49216037 13087 - protein coding gene caspase recruitment domain family, member 19
Tssr122459 13 49204066 to 49204109 43 - TSS region transcription start site region 122459
Tssr122460 13 49205428 to 49205442 14 - TSS region transcription start site region 122460
Tssr122461 13 49205457 to 49205483 26 - TSS region transcription start site region 122461
Tssr122462 13 49205507 to 49205519 12 - TSS region transcription start site region 122462
Tssr122463 13 49208039 to 49208053 14 - TSS region transcription start site region 122463
Tssr122464 13 49208055 to 49208069 14 - TSS region transcription start site region 122464
Tssr122465 13 49210285 to 49210310 25 - TSS region transcription start site region 122465
Tssr122466 13 49212361 to 49212373 12 - TSS region transcription start site region 122466
Tssr119694 13 49213890 to 49213902 12 + TSS region transcription start site region 119694
Cpgi5581 13 49215438 to 49216416 978 CpG island CpG island 5581
Tssr119695 13 49215637 to 49215654 17 + TSS region transcription start site region 119695
Tssr119696 13 49215660 to 49215676 16 + TSS region transcription start site region 119696
Tssr4064 13 49215836 to 49215847 11 - TSS region transcription start site region 4064
Tssr122467 13 49215858 to 49215903 45 - TSS region transcription start site region 122467
Tssr4065 13 49215934 to 49215976 42 - TSS region transcription start site region 4065
Tssr122468 13 49215978 to 49216052 74 - TSS region transcription start site region 122468
Tssr119697 13 49216156 to 49216202 46 + TSS region transcription start site region 119697
Tssr4066 13 49223303 to 49223305 2 + TSS region transcription start site region 4066
Susd3 13 49230690 to 49248706 18016 - protein coding gene sushi domain containing 3
Tssr122469 13 49237599 to 49237607 8 - TSS region transcription start site region 122469
Tssr122470 13 49240641 to 49240674 33 - TSS region transcription start site region 122470
Tssr122471 13 49242862 to 49242878 16 - TSS region transcription start site region 122471
Tssr122472 13 49242901 to 49242923 22 - TSS region transcription start site region 122472
Tssr122473 13 49242925 to 49242940 15 - TSS region transcription start site region 122473
Tssr119698 13 49247471 to 49247472 1 + TSS region transcription start site region 119698
Cpgi5582 13 49247475 to 49248415 940 CpG island CpG island 5582
Tssr122474 13 49248120 to 49248140 20 - TSS region transcription start site region 122474
Tssr122475 13 49248146 to 49248168 22 - TSS region transcription start site region 122475
Tssr122476 13 49248182 to 49248184 2 - TSS region transcription start site region 122476
Tssr122477 13 49248713 to 49248725 12 - TSS region transcription start site region 122477
E030007A22Rik 13 49259043 to 49261792 2749 lncRNA gene RIKEN cDNA E030007A22 gene
Fgd3 13 49263110 to 49320469 57359 - protein coding gene FYVE, RhoGEF and PH domain containing 3
Tssr122478 13 49287729 to 49287746 17 - TSS region transcription start site region 122478
Tssr122479 13 49287913 to 49287957 44 - TSS region transcription start site region 122479
Tssr122480 13 49298649 to 49298657 8 - TSS region transcription start site region 122480
Tssr122481 13 49298678 to 49298697 19 - TSS region transcription start site region 122481
Tssr122482 13 49298802 to 49298813 11 - TSS region transcription start site region 122482
Tssr119699 13 49298959 to 49298961 2 + TSS region transcription start site region 119699
Tssr119700 13 49307914 to 49307937 23 + TSS region transcription start site region 119700
Tssr122483 13 49308986 to 49309001 15 - TSS region transcription start site region 122483
Cpgi5583 13 49309098 to 49309393 295 CpG island CpG island 5583
Tssr122484 13 49309198 to 49309214 16 - TSS region transcription start site region 122484
Tssr122485 13 49309217 to 49309257 40 - TSS region transcription start site region 122485
Tssr122486 13 49320199 to 49320218 19 - TSS region transcription start site region 122486
Tssr122487 13 49320219 to 49320289 70 - TSS region transcription start site region 122487