Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:48992666-49302684

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit268 13 49002994 to 49003134 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 268
Tssr119677 13 49013753 to 49013765 12 + TSS region transcription start site region 119677
Tssr122431 13 49014583 to 49014623 40 - TSS region transcription start site region 122431
Tssr122432 13 49015283 to 49015292 9 - TSS region transcription start site region 122432
Tssr122433 13 49015477 to 49015497 20 - TSS region transcription start site region 122433
Cpgi5578 13 49016180 to 49016554 374 CpG island CpG island 5578
Wnk2 13 49036303 to 49148014 111711 - protein coding gene WNK lysine deficient protein kinase 2
Tssr122434 13 49043918 to 49043927 9 - TSS region transcription start site region 122434
Tssr122435 13 49062439 to 49062443 4 - TSS region transcription start site region 122435
Tssr122436 13 49127869 to 49127883 14 - TSS region transcription start site region 122436
Cpgi5579 13 49146247 to 49148515 2268 CpG island CpG island 5579
Tssr122437 13 49147666 to 49147684 18 - TSS region transcription start site region 122437
Tssr122438 13 49147931 to 49148037 106 - TSS region transcription start site region 122438
D13Mit93 13 49158030 to 49158163 133 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 93
Gm40942 13 49161905 to 49163639 1734 - lncRNA gene predicted gene, 40942
Tssr122439 13 49168273 to 49168316 43 - TSS region transcription start site region 122439
Gm40943 13 49169808 to 49183825 14017 - lncRNA gene predicted gene, 40943
Tssr122440 13 49183719 to 49183732 13 - TSS region transcription start site region 122440
Tssr122441 13 49183789 to 49183800 11 - TSS region transcription start site region 122441
Tssr122442 13 49183848 to 49183857 9 - TSS region transcription start site region 122442
Tssr122443 13 49183928 to 49183957 29 - TSS region transcription start site region 122443
Tssr122444 13 49183968 to 49183975 7 - TSS region transcription start site region 122444
Cpgi5580 13 49186819 to 49188351 1532 CpG island CpG island 5580
Tssr119678 13 49187485 to 49187539 54 + TSS region transcription start site region 119678
Ninj1 13 49187547 to 49196251 8704 + protein coding gene ninjurin 1
Tssr122445 13 49187913 to 49187924 11 - TSS region transcription start site region 122445
Tssr122446 13 49187938 to 49187952 14 - TSS region transcription start site region 122446
Tssr122447 13 49187953 to 49187961 8 - TSS region transcription start site region 122447
Tssr122448 13 49187997 to 49188011 14 - TSS region transcription start site region 122448
Tssr122449 13 49188013 to 49188029 16 - TSS region transcription start site region 122449
Tssr119679 13 49188156 to 49188167 11 + TSS region transcription start site region 119679
Tssr119680 13 49188202 to 49188216 14 + TSS region transcription start site region 119680
Tssr119681 13 49188245 to 49188261 16 + TSS region transcription start site region 119681
Tssr119682 13 49188508 to 49188558 50 + TSS region transcription start site region 119682
Tssr122450 13 49190151 to 49190167 16 - TSS region transcription start site region 122450
Tssr122451 13 49190198 to 49190208 10 - TSS region transcription start site region 122451
Tssr119683 13 49190329 to 49190331 2 + TSS region transcription start site region 119683
Tssr119684 13 49190352 to 49190358 6 + TSS region transcription start site region 119684
Tssr122452 13 49190793 to 49190803 10 - TSS region transcription start site region 122452
Tssr119685 13 49190953 to 49190959 6 + TSS region transcription start site region 119685
Tssr119686 13 49191071 to 49191084 13 + TSS region transcription start site region 119686
Tssr122453 13 49191694 to 49191718 24 - TSS region transcription start site region 122453
Tssr119687 13 49193725 to 49193760 35 + TSS region transcription start site region 119687
Tssr119688 13 49193861 to 49193917 56 + TSS region transcription start site region 119688
Tssr119689 13 49195684 to 49195699 15 + TSS region transcription start site region 119689
Tssr119690 13 49195710 to 49195738 28 + TSS region transcription start site region 119690
Tssr119691 13 49195928 to 49195953 25 + TSS region transcription start site region 119691
Tssr122454 13 49195969 to 49195988 19 - TSS region transcription start site region 122454
Tssr122455 13 49195992 to 49196007 15 - TSS region transcription start site region 122455
Tssr119692 13 49197027 to 49197033 6 + TSS region transcription start site region 119692
Tssr119693 13 49197059 to 49197068 9 + TSS region transcription start site region 119693
Tssr122456 13 49200526 to 49200531 5 - TSS region transcription start site region 122456
Tssr122457 13 49200595 to 49200608 13 - TSS region transcription start site region 122457
Tssr122458 13 49200719 to 49200736 17 - TSS region transcription start site region 122458
Card19 13 49202950 to 49216037 13087 - protein coding gene caspase recruitment domain family, member 19
Tssr122459 13 49204066 to 49204109 43 - TSS region transcription start site region 122459
Tssr122460 13 49205428 to 49205442 14 - TSS region transcription start site region 122460
Tssr122461 13 49205457 to 49205483 26 - TSS region transcription start site region 122461
Tssr122462 13 49205507 to 49205519 12 - TSS region transcription start site region 122462
Tssr122463 13 49208039 to 49208053 14 - TSS region transcription start site region 122463
Tssr122464 13 49208055 to 49208069 14 - TSS region transcription start site region 122464
Tssr122465 13 49210285 to 49210310 25 - TSS region transcription start site region 122465
Tssr122466 13 49212361 to 49212373 12 - TSS region transcription start site region 122466
Tssr119694 13 49213890 to 49213902 12 + TSS region transcription start site region 119694
Cpgi5581 13 49215438 to 49216416 978 CpG island CpG island 5581
Tssr119695 13 49215637 to 49215654 17 + TSS region transcription start site region 119695
Tssr119696 13 49215660 to 49215676 16 + TSS region transcription start site region 119696
Tssr4064 13 49215836 to 49215847 11 - TSS region transcription start site region 4064
Tssr122467 13 49215858 to 49215903 45 - TSS region transcription start site region 122467
Tssr4065 13 49215934 to 49215976 42 - TSS region transcription start site region 4065
Tssr122468 13 49215978 to 49216052 74 - TSS region transcription start site region 122468
Tssr119697 13 49216156 to 49216202 46 + TSS region transcription start site region 119697
Tssr4066 13 49223303 to 49223305 2 + TSS region transcription start site region 4066
Susd3 13 49230690 to 49248706 18016 - protein coding gene sushi domain containing 3
Tssr122469 13 49237599 to 49237607 8 - TSS region transcription start site region 122469
Tssr122470 13 49240641 to 49240674 33 - TSS region transcription start site region 122470
Tssr122471 13 49242862 to 49242878 16 - TSS region transcription start site region 122471
Tssr122472 13 49242901 to 49242923 22 - TSS region transcription start site region 122472
Tssr122473 13 49242925 to 49242940 15 - TSS region transcription start site region 122473
Tssr119698 13 49247471 to 49247472 1 + TSS region transcription start site region 119698
Cpgi5582 13 49247475 to 49248415 940 CpG island CpG island 5582
Tssr122474 13 49248120 to 49248140 20 - TSS region transcription start site region 122474
Tssr122475 13 49248146 to 49248168 22 - TSS region transcription start site region 122475
Tssr122476 13 49248182 to 49248184 2 - TSS region transcription start site region 122476
Tssr122477 13 49248713 to 49248725 12 - TSS region transcription start site region 122477
E030007A22Rik 13 49259043 to 49261792 2749 lncRNA gene RIKEN cDNA E030007A22 gene
Fgd3 13 49263110 to 49320469 57359 - protein coding gene FYVE, RhoGEF and PH domain containing 3
Tssr122478 13 49287729 to 49287746 17 - TSS region transcription start site region 122478
Tssr122479 13 49287913 to 49287957 44 - TSS region transcription start site region 122479
Tssr122480 13 49298649 to 49298657 8 - TSS region transcription start site region 122480
Tssr122481 13 49298678 to 49298697 19 - TSS region transcription start site region 122481
Tssr122482 13 49298802 to 49298813 11 - TSS region transcription start site region 122482
Tssr119699 13 49298959 to 49298961 2 + TSS region transcription start site region 119699