Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:48818918-49268927

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phf2 13 48801750 to 48870885 69135 - protein coding gene PHD finger protein 2
Tssr122400 13 48819680 to 48819694 14 - TSS region transcription start site region 122400
Tssr122401 13 48819701 to 48819713 12 - TSS region transcription start site region 122401
Tssr122402 13 48819716 to 48819738 22 - TSS region transcription start site region 122402
Tssr122403 13 48819749 to 48819753 4 - TSS region transcription start site region 122403
D13Mit120 13 48829584 to 48829716 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 120
Tssr122404 13 48863654 to 48863679 25 - TSS region transcription start site region 122404
Cpgi5575 13 48869780 to 48871756 1976 CpG island CpG island 5575
Tssr119669 13 48870050 to 48870066 16 + TSS region transcription start site region 119669
Tssr119670 13 48870074 to 48870091 17 + TSS region transcription start site region 119670
Tssr122405 13 48870889 to 48870951 62 - TSS region transcription start site region 122405
Tssr122406 13 48871006 to 48871020 14 - TSS region transcription start site region 122406
Tssr122407 13 48871036 to 48871071 35 - TSS region transcription start site region 122407
Tssr122408 13 48871106 to 48871159 53 - TSS region transcription start site region 122408
Phf2os1 13 48871112 to 48875460 4348 + antisense lncRNA gene PHD finger protein 2, opposite strand 1
Tssr122409 13 48871689 to 48871706 17 - TSS region transcription start site region 122409
Tssr122410 13 48871712 to 48871725 13 - TSS region transcription start site region 122410
Tssr122411 13 48871754 to 48871770 16 - TSS region transcription start site region 122411
Tssr122412 13 48872466 to 48872491 25 - TSS region transcription start site region 122412
Cpgi5576 13 48878376 to 48879047 671 CpG island CpG island 5576
Tssr122413 13 48878656 to 48878669 13 - TSS region transcription start site region 122413
Fam120a 13 48879216 to 48967877 88661 - protein coding gene family with sequence similarity 120, member A
Tssr122414 13 48880013 to 48880052 39 - TSS region transcription start site region 122414
Tssr122415 13 48880142 to 48880147 5 - TSS region transcription start site region 122415
Tssr122416 13 48880306 to 48880328 22 - TSS region transcription start site region 122416
Tssr122417 13 48880439 to 48880455 16 - TSS region transcription start site region 122417
Tssr122418 13 48880672 to 48880689 17 - TSS region transcription start site region 122418
Tssr122419 13 48922199 to 48922218 19 - TSS region transcription start site region 122419
Tssr122420 13 48935128 to 48935138 10 - TSS region transcription start site region 122420
Tssr122421 13 48949141 to 48949157 16 - TSS region transcription start site region 122421
Cpgi5577 13 48966892 to 48968857 1965 CpG island CpG island 5577
Tssr122422 13 48968004 to 48968029 25 - TSS region transcription start site region 122422
Tssr122423 13 48968034 to 48968068 34 - TSS region transcription start site region 122423
Tssr122424 13 48968077 to 48968082 5 - TSS region transcription start site region 122424
Fam120aos 13 48968112 to 48969905 1793 + lincRNA gene family with sequence similarity 120A, opposite strand
Tssr122425 13 48968115 to 48968124 9 - TSS region transcription start site region 122425
Tssr119671 13 48968161 to 48968216 55 + TSS region transcription start site region 119671
Tssr122426 13 48968209 to 48968220 11 - TSS region transcription start site region 122426
Tssr4062 13 48968236 to 48968251 15 - TSS region transcription start site region 4062
Tssr4063 13 48968276 to 48968286 10 - TSS region transcription start site region 4063
Tssr119672 13 48968324 to 48968355 31 + TSS region transcription start site region 119672
Tssr119673 13 48968367 to 48968430 63 + TSS region transcription start site region 119673
Tssr122427 13 48968421 to 48968466 45 - TSS region transcription start site region 122427
Tssr122428 13 48968478 to 48968489 11 - TSS region transcription start site region 122428
Tssr122429 13 48968756 to 48968759 3 - TSS region transcription start site region 122429
Tssr119674 13 48968900 to 48968904 4 + TSS region transcription start site region 119674
Tssr119675 13 48969011 to 48969023 12 + TSS region transcription start site region 119675
Tssr119676 13 48969088 to 48969111 23 + TSS region transcription start site region 119676
Tssr122430 13 48971202 to 48971205 3 - TSS region transcription start site region 122430
Gm18312 13 48978708 to 48981240 2532 - pseudogene predicted gene, 18312
D13Mit268 13 49002994 to 49003134 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 268
Tssr119677 13 49013753 to 49013765 12 + TSS region transcription start site region 119677
Tssr122431 13 49014583 to 49014623 40 - TSS region transcription start site region 122431
Tssr122432 13 49015283 to 49015292 9 - TSS region transcription start site region 122432
Tssr122433 13 49015477 to 49015497 20 - TSS region transcription start site region 122433
Cpgi5578 13 49016180 to 49016554 374 CpG island CpG island 5578
Wnk2 13 49036303 to 49148014 111711 - protein coding gene WNK lysine deficient protein kinase 2
Tssr122434 13 49043918 to 49043927 9 - TSS region transcription start site region 122434
Tssr122435 13 49062439 to 49062443 4 - TSS region transcription start site region 122435
Tssr122436 13 49127869 to 49127883 14 - TSS region transcription start site region 122436
Cpgi5579 13 49146247 to 49148515 2268 CpG island CpG island 5579
Tssr122437 13 49147666 to 49147684 18 - TSS region transcription start site region 122437
Tssr122438 13 49147931 to 49148037 106 - TSS region transcription start site region 122438
D13Mit93 13 49158030 to 49158163 133 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 93
Gm40942 13 49161905 to 49163639 1734 - lncRNA gene predicted gene, 40942
Tssr122439 13 49168273 to 49168316 43 - TSS region transcription start site region 122439
Gm40943 13 49169808 to 49183825 14017 - lncRNA gene predicted gene, 40943
Tssr122440 13 49183719 to 49183732 13 - TSS region transcription start site region 122440
Tssr122441 13 49183789 to 49183800 11 - TSS region transcription start site region 122441
Tssr122442 13 49183848 to 49183857 9 - TSS region transcription start site region 122442
Tssr122443 13 49183928 to 49183957 29 - TSS region transcription start site region 122443
Tssr122444 13 49183968 to 49183975 7 - TSS region transcription start site region 122444
Cpgi5580 13 49186819 to 49188351 1532 CpG island CpG island 5580
Tssr119678 13 49187485 to 49187539 54 + TSS region transcription start site region 119678
Ninj1 13 49187547 to 49196251 8704 + protein coding gene ninjurin 1
Tssr122445 13 49187913 to 49187924 11 - TSS region transcription start site region 122445
Tssr122446 13 49187938 to 49187952 14 - TSS region transcription start site region 122446
Tssr122447 13 49187953 to 49187961 8 - TSS region transcription start site region 122447
Tssr122448 13 49187997 to 49188011 14 - TSS region transcription start site region 122448
Tssr122449 13 49188013 to 49188029 16 - TSS region transcription start site region 122449
Tssr119679 13 49188156 to 49188167 11 + TSS region transcription start site region 119679
Tssr119680 13 49188202 to 49188216 14 + TSS region transcription start site region 119680
Tssr119681 13 49188245 to 49188261 16 + TSS region transcription start site region 119681
Tssr119682 13 49188508 to 49188558 50 + TSS region transcription start site region 119682
Tssr122450 13 49190151 to 49190167 16 - TSS region transcription start site region 122450
Tssr122451 13 49190198 to 49190208 10 - TSS region transcription start site region 122451
Tssr119683 13 49190329 to 49190331 2 + TSS region transcription start site region 119683
Tssr119684 13 49190352 to 49190358 6 + TSS region transcription start site region 119684
Tssr122452 13 49190793 to 49190803 10 - TSS region transcription start site region 122452
Tssr119685 13 49190953 to 49190959 6 + TSS region transcription start site region 119685
Tssr119686 13 49191071 to 49191084 13 + TSS region transcription start site region 119686
Tssr122453 13 49191694 to 49191718 24 - TSS region transcription start site region 122453
Tssr119687 13 49193725 to 49193760 35 + TSS region transcription start site region 119687
Tssr119688 13 49193861 to 49193917 56 + TSS region transcription start site region 119688
Tssr119689 13 49195684 to 49195699 15 + TSS region transcription start site region 119689
Tssr119690 13 49195710 to 49195738 28 + TSS region transcription start site region 119690
Tssr119691 13 49195928 to 49195953 25 + TSS region transcription start site region 119691
Tssr122454 13 49195969 to 49195988 19 - TSS region transcription start site region 122454
Tssr122455 13 49195992 to 49196007 15 - TSS region transcription start site region 122455
Tssr119692 13 49197027 to 49197033 6 + TSS region transcription start site region 119692
Tssr119693 13 49197059 to 49197068 9 + TSS region transcription start site region 119693
Tssr122456 13 49200526 to 49200531 5 - TSS region transcription start site region 122456
Tssr122457 13 49200595 to 49200608 13 - TSS region transcription start site region 122457
Tssr122458 13 49200719 to 49200736 17 - TSS region transcription start site region 122458
Card19 13 49202950 to 49216037 13087 - protein coding gene caspase recruitment domain family, member 19
Tssr122459 13 49204066 to 49204109 43 - TSS region transcription start site region 122459
Tssr122460 13 49205428 to 49205442 14 - TSS region transcription start site region 122460
Tssr122461 13 49205457 to 49205483 26 - TSS region transcription start site region 122461
Tssr122462 13 49205507 to 49205519 12 - TSS region transcription start site region 122462
Tssr122463 13 49208039 to 49208053 14 - TSS region transcription start site region 122463
Tssr122464 13 49208055 to 49208069 14 - TSS region transcription start site region 122464
Tssr122465 13 49210285 to 49210310 25 - TSS region transcription start site region 122465
Tssr122466 13 49212361 to 49212373 12 - TSS region transcription start site region 122466
Tssr119694 13 49213890 to 49213902 12 + TSS region transcription start site region 119694
Cpgi5581 13 49215438 to 49216416 978 CpG island CpG island 5581
Tssr119695 13 49215637 to 49215654 17 + TSS region transcription start site region 119695
Tssr119696 13 49215660 to 49215676 16 + TSS region transcription start site region 119696
Tssr4064 13 49215836 to 49215847 11 - TSS region transcription start site region 4064
Tssr122467 13 49215858 to 49215903 45 - TSS region transcription start site region 122467
Tssr4065 13 49215934 to 49215976 42 - TSS region transcription start site region 4065
Tssr122468 13 49215978 to 49216052 74 - TSS region transcription start site region 122468
Tssr119697 13 49216156 to 49216202 46 + TSS region transcription start site region 119697
Tssr4066 13 49223303 to 49223305 2 + TSS region transcription start site region 4066
Susd3 13 49230690 to 49248706 18016 - protein coding gene sushi domain containing 3
Tssr122469 13 49237599 to 49237607 8 - TSS region transcription start site region 122469
Tssr122470 13 49240641 to 49240674 33 - TSS region transcription start site region 122470
Tssr122471 13 49242862 to 49242878 16 - TSS region transcription start site region 122471
Tssr122472 13 49242901 to 49242923 22 - TSS region transcription start site region 122472
Tssr122473 13 49242925 to 49242940 15 - TSS region transcription start site region 122473
Tssr119698 13 49247471 to 49247472 1 + TSS region transcription start site region 119698
Cpgi5582 13 49247475 to 49248415 940 CpG island CpG island 5582
Tssr122474 13 49248120 to 49248140 20 - TSS region transcription start site region 122474
Tssr122475 13 49248146 to 49248168 22 - TSS region transcription start site region 122475
Tssr122476 13 49248182 to 49248184 2 - TSS region transcription start site region 122476
Tssr122477 13 49248713 to 49248725 12 - TSS region transcription start site region 122477
E030007A22Rik 13 49259043 to 49261792 2749 lncRNA gene RIKEN cDNA E030007A22 gene
Fgd3 13 49263110 to 49320469 57359 - protein coding gene FYVE, RhoGEF and PH domain containing 3