Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:48603376-49154047

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpdc1 13 48577872 to 48625664 47792 - protein coding gene protein tyrosine phosphatase domain containing 1
Cpgi5564 13 48625136 to 48626061 925 CpG island CpG island 5564
Tssr122396 13 48625504 to 48625564 60 - TSS region transcription start site region 122396
Tssr122397 13 48625571 to 48625594 23 - TSS region transcription start site region 122397
Tssr122398 13 48625596 to 48625618 22 - TSS region transcription start site region 122398
Gm36606 13 48652722 to 48662831 10109 - lncRNA gene predicted gene, 36606
Cpgi5565 13 48658515 to 48659069 554 CpG island CpG island 5565
Cpgi5566 13 48659799 to 48660193 394 CpG island CpG island 5566
Cpgi5567 13 48662285 to 48663991 1706 CpG island CpG island 5567
Tssr119663 13 48662525 to 48662539 14 + TSS region transcription start site region 119663
Tssr122399 13 48662703 to 48662748 45 - TSS region transcription start site region 122399
Tssr119664 13 48662885 to 48662888 3 + TSS region transcription start site region 119664
Tssr119665 13 48662907 to 48662922 15 + TSS region transcription start site region 119665
Tssr119666 13 48662959 to 48662966 7 + TSS region transcription start site region 119666
Tssr119667 13 48662989 to 48663046 57 + TSS region transcription start site region 119667
Barx1 13 48663036 to 48666507 3471 + protein coding gene BarH-like homeobox 1
Tssr119668 13 48663062 to 48663074 12 + TSS region transcription start site region 119668
Cpgi5568 13 48664886 to 48665453 567 CpG island CpG island 5568
Cpgi5569 13 48665504 to 48666433 929 CpG island CpG island 5569
Cpgi5570 13 48668403 to 48669574 1171 CpG island CpG island 5570
Cpgi5571 13 48672525 to 48672765 240 CpG island CpG island 5571
Gm36784 13 48708189 to 48734084 25895 + lncRNA gene predicted gene, 36784
Cpgi5572 13 48717234 to 48717466 232 CpG island CpG island 5572
Cpgi5573 13 48731146 to 48732140 994 CpG island CpG island 5573
Cpgi5574 13 48732631 to 48733061 430 CpG island CpG island 5574
D13Mit269 13 48749733 to 48749848 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 269
Rpl17-ps6 13 48763088 to 48763610 522 - pseudogene ribosomal protein L17, pseudogene 6
Phf2 13 48801750 to 48870885 69135 - protein coding gene PHD finger protein 2
Tssr122400 13 48819680 to 48819694 14 - TSS region transcription start site region 122400
Tssr122401 13 48819701 to 48819713 12 - TSS region transcription start site region 122401
Tssr122402 13 48819716 to 48819738 22 - TSS region transcription start site region 122402
Tssr122403 13 48819749 to 48819753 4 - TSS region transcription start site region 122403
D13Mit120 13 48829584 to 48829716 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 120
Tssr122404 13 48863654 to 48863679 25 - TSS region transcription start site region 122404
Cpgi5575 13 48869780 to 48871756 1976 CpG island CpG island 5575
Tssr119669 13 48870050 to 48870066 16 + TSS region transcription start site region 119669
Tssr119670 13 48870074 to 48870091 17 + TSS region transcription start site region 119670
Tssr122405 13 48870889 to 48870951 62 - TSS region transcription start site region 122405
Tssr122406 13 48871006 to 48871020 14 - TSS region transcription start site region 122406
Tssr122407 13 48871036 to 48871071 35 - TSS region transcription start site region 122407
Tssr122408 13 48871106 to 48871159 53 - TSS region transcription start site region 122408
Phf2os1 13 48871112 to 48875460 4348 + antisense lncRNA gene PHD finger protein 2, opposite strand 1
Tssr122409 13 48871689 to 48871706 17 - TSS region transcription start site region 122409
Tssr122410 13 48871712 to 48871725 13 - TSS region transcription start site region 122410
Tssr122411 13 48871754 to 48871770 16 - TSS region transcription start site region 122411
Tssr122412 13 48872466 to 48872491 25 - TSS region transcription start site region 122412
Cpgi5576 13 48878376 to 48879047 671 CpG island CpG island 5576
Tssr122413 13 48878656 to 48878669 13 - TSS region transcription start site region 122413
Fam120a 13 48879216 to 48967877 88661 - protein coding gene family with sequence similarity 120, member A
Tssr122414 13 48880013 to 48880052 39 - TSS region transcription start site region 122414
Tssr122415 13 48880142 to 48880147 5 - TSS region transcription start site region 122415
Tssr122416 13 48880306 to 48880328 22 - TSS region transcription start site region 122416
Tssr122417 13 48880439 to 48880455 16 - TSS region transcription start site region 122417
Tssr122418 13 48880672 to 48880689 17 - TSS region transcription start site region 122418
Tssr122419 13 48922199 to 48922218 19 - TSS region transcription start site region 122419
Tssr122420 13 48935128 to 48935138 10 - TSS region transcription start site region 122420
Tssr122421 13 48949141 to 48949157 16 - TSS region transcription start site region 122421
Cpgi5577 13 48966892 to 48968857 1965 CpG island CpG island 5577
Tssr122422 13 48968004 to 48968029 25 - TSS region transcription start site region 122422
Tssr122423 13 48968034 to 48968068 34 - TSS region transcription start site region 122423
Tssr122424 13 48968077 to 48968082 5 - TSS region transcription start site region 122424
Fam120aos 13 48968112 to 48969905 1793 + lincRNA gene family with sequence similarity 120A, opposite strand
Tssr122425 13 48968115 to 48968124 9 - TSS region transcription start site region 122425
Tssr119671 13 48968161 to 48968216 55 + TSS region transcription start site region 119671
Tssr122426 13 48968209 to 48968220 11 - TSS region transcription start site region 122426
Tssr4062 13 48968236 to 48968251 15 - TSS region transcription start site region 4062
Tssr4063 13 48968276 to 48968286 10 - TSS region transcription start site region 4063
Tssr119672 13 48968324 to 48968355 31 + TSS region transcription start site region 119672
Tssr119673 13 48968367 to 48968430 63 + TSS region transcription start site region 119673
Tssr122427 13 48968421 to 48968466 45 - TSS region transcription start site region 122427
Tssr122428 13 48968478 to 48968489 11 - TSS region transcription start site region 122428
Tssr122429 13 48968756 to 48968759 3 - TSS region transcription start site region 122429
Tssr119674 13 48968900 to 48968904 4 + TSS region transcription start site region 119674
Tssr119675 13 48969011 to 48969023 12 + TSS region transcription start site region 119675
Tssr119676 13 48969088 to 48969111 23 + TSS region transcription start site region 119676
Tssr122430 13 48971202 to 48971205 3 - TSS region transcription start site region 122430
Gm18312 13 48978708 to 48981240 2532 - pseudogene predicted gene, 18312
D13Mit268 13 49002994 to 49003134 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 268
Tssr119677 13 49013753 to 49013765 12 + TSS region transcription start site region 119677
Tssr122431 13 49014583 to 49014623 40 - TSS region transcription start site region 122431
Tssr122432 13 49015283 to 49015292 9 - TSS region transcription start site region 122432
Tssr122433 13 49015477 to 49015497 20 - TSS region transcription start site region 122433
Cpgi5578 13 49016180 to 49016554 374 CpG island CpG island 5578
Wnk2 13 49036303 to 49148014 111711 - protein coding gene WNK lysine deficient protein kinase 2
Tssr122434 13 49043918 to 49043927 9 - TSS region transcription start site region 122434
Tssr122435 13 49062439 to 49062443 4 - TSS region transcription start site region 122435
Tssr122436 13 49127869 to 49127883 14 - TSS region transcription start site region 122436
Cpgi5579 13 49146247 to 49148515 2268 CpG island CpG island 5579
Tssr122437 13 49147666 to 49147684 18 - TSS region transcription start site region 122437
Tssr122438 13 49147931 to 49148037 106 - TSS region transcription start site region 122438