Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:48239665-48646672

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A330033J07Rik 13 48044231 to 48262623 218392 - antisense lncRNA gene RIKEN cDNA A330033J07 gene
Gm36183 13 48227702 to 48241412 13710 + lncRNA gene predicted gene, 36183
Gm49291 13 48239054 to 48262591 23537 - lincRNA gene predicted gene, 49291
Gm40939 13 48242373 to 48253779 11406 + lncRNA gene predicted gene, 40939
Cpgi5560 13 48260595 to 48262915 2320 CpG island CpG island 5560
Tssr119655 13 48261081 to 48261091 10 + TSS region transcription start site region 119655
Tssr119656 13 48261106 to 48261123 17 + TSS region transcription start site region 119656
Tssr119657 13 48261161 to 48261168 7 + TSS region transcription start site region 119657
Tssr119658 13 48261194 to 48261199 5 + TSS region transcription start site region 119658
Id4 13 48261427 to 48264036 2609 + protein coding gene inhibitor of DNA binding 4
A330048O09Rik 13 48272418 to 48273884 1466 - lincRNA gene RIKEN cDNA A330048O09 gene
Tssr122383 13 48273865 to 48273909 44 - TSS region transcription start site region 122383
Gm8588 13 48312670 to 48314251 1581 + pseudogene predicted gene 8588
Tssr122384 13 48314606 to 48314616 10 - TSS region transcription start site region 122384
Gm48648 13 48359459 to 48408512 49053 - lincRNA gene predicted gene, 48648
Gm40940 13 48439665 to 48446672 7007 - lncRNA gene predicted gene, 40940
Gm40941 13 48465810 to 48477602 11792 - lncRNA gene predicted gene, 40941
Zfp169 13 48487647 to 48513451 25804 - protein coding gene zinc finger protein 169
Cpgi5561 13 48490421 to 48490900 479 CpG island CpG island 5561
Tssr119659 13 48491006 to 48491011 5 + TSS region transcription start site region 119659
Tssr119660 13 48491032 to 48491047 15 + TSS region transcription start site region 119660
Tssr119661 13 48491060 to 48491065 5 + TSS region transcription start site region 119661
Gm36402 13 48491403 to 48505499 14096 + lncRNA gene predicted gene, 36402
Cpgi5562 13 48513202 to 48513690 488 CpG island CpG island 5562
Tssr122385 13 48513394 to 48513452 58 - TSS region transcription start site region 122385
A830005F24Rik 13 48513570 to 48514859 1289 + protein coding gene RIKEN cDNA A830005F24 gene
6720427I07Rik 13 48532905 to 48546500 13595 - lincRNA gene RIKEN cDNA 6720427I07 gene
Mirlet7d 13 48536012 to 48536114 102 - miRNA gene microRNA let7d
Mirc8 13 48536012 to 48538272 2260 complex/cluster/region microRNA cluster 8, including Mirlet7d, Mirlet7f-1, and Mirlet7a-1
Tssr122386 13 48536018 to 48536023 5 - TSS region transcription start site region 122386
Gm24111 13 48537825 to 48537921 96 + miRNA gene predicted gene, 24111
Tssr122387 13 48537827 to 48537834 7 - TSS region transcription start site region 122387
Mirlet7f-1 13 48537829 to 48537917 88 - miRNA gene microRNA let7f-1
Mirlet7a-1 13 48538179 to 48538272 93 - miRNA gene microRNA let7a-1
Tssr122388 13 48538184 to 48538190 6 - TSS region transcription start site region 122388
Gm37238 13 48542644 to 48545033 2389 - unclassified gene predicted gene, 37238
Cpgi5563 13 48545397 to 48546971 1574 CpG island CpG island 5563
Tssr122389 13 48545743 to 48545758 15 - TSS region transcription start site region 122389
Tssr122390 13 48546452 to 48546465 13 - TSS region transcription start site region 122390
Tssr122391 13 48546470 to 48546492 22 - TSS region transcription start site region 122391
Tssr122392 13 48546493 to 48546524 31 - TSS region transcription start site region 122392
Tssr119662 13 48550808 to 48550845 37 + TSS region transcription start site region 119662
Tssr122393 13 48552319 to 48552330 11 - TSS region transcription start site region 122393
Tssr122394 13 48554712 to 48554723 11 - TSS region transcription start site region 122394
Gm25232 13 48572253 to 48572384 131 - snoRNA gene predicted gene, 25232
D13Mit95 13 48577260 to 48577350 90 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 95
Ptpdc1 13 48577872 to 48625664 47792 - protein coding gene protein tyrosine phosphatase domain containing 1
Tssr122395 13 48593363 to 48593400 37 - TSS region transcription start site region 122395
Gm36550 13 48593501 to 48595843 2342 + antisense lncRNA gene predicted gene, 36550
Cpgi5564 13 48625136 to 48626061 925 CpG island CpG island 5564
Tssr122396 13 48625504 to 48625564 60 - TSS region transcription start site region 122396
Tssr122397 13 48625571 to 48625594 23 - TSS region transcription start site region 122397
Tssr122398 13 48625596 to 48625618 22 - TSS region transcription start site region 122398