Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:48003501-49185843

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155 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4931429P17Rik 13 47960330 to 48018608 58278 - lincRNA gene RIKEN cDNA 4931429P17 gene
Gm36101 13 48031773 to 48042471 10698 + lincRNA gene predicted gene, 36101
Tssr119654 13 48031839 to 48031856 17 + TSS region transcription start site region 119654
A330033J07Rik 13 48044231 to 48262623 218392 - antisense lncRNA gene RIKEN cDNA A330033J07 gene
Cpgi5556 13 48046412 to 48046608 196 CpG island CpG island 5556
Cpgi5557 13 48082389 to 48082630 241 CpG island CpG island 5557
Cpgi5558 13 48086771 to 48087019 248 CpG island CpG island 5558
Gm36346 13 48107897 to 48111641 3744 - lincRNA gene predicted gene, 36346
Gm36183 13 48227702 to 48241412 13710 + lncRNA gene predicted gene, 36183
Cpgi5559 13 48227722 to 48228149 427 CpG island CpG island 5559
Gm49291 13 48239054 to 48262591 23537 - lincRNA gene predicted gene, 49291
Gm40939 13 48242373 to 48253779 11406 + lncRNA gene predicted gene, 40939
Cpgi5560 13 48260595 to 48262915 2320 CpG island CpG island 5560
Tssr119655 13 48261081 to 48261091 10 + TSS region transcription start site region 119655
Tssr119656 13 48261106 to 48261123 17 + TSS region transcription start site region 119656
Tssr119657 13 48261161 to 48261168 7 + TSS region transcription start site region 119657
Tssr119658 13 48261194 to 48261199 5 + TSS region transcription start site region 119658
Id4 13 48261427 to 48264036 2609 + protein coding gene inhibitor of DNA binding 4
A330048O09Rik 13 48272418 to 48273884 1466 - lincRNA gene RIKEN cDNA A330048O09 gene
Tssr122383 13 48273865 to 48273909 44 - TSS region transcription start site region 122383
Gm8588 13 48312670 to 48314251 1581 + pseudogene predicted gene 8588
Tssr122384 13 48314606 to 48314616 10 - TSS region transcription start site region 122384
Gm48648 13 48359459 to 48408512 49053 - lincRNA gene predicted gene, 48648
Gm40940 13 48439665 to 48446672 7007 - lncRNA gene predicted gene, 40940
Gm40941 13 48465810 to 48477602 11792 - lncRNA gene predicted gene, 40941
Zfp169 13 48487647 to 48513451 25804 - protein coding gene zinc finger protein 169
Cpgi5561 13 48490421 to 48490900 479 CpG island CpG island 5561
Tssr119659 13 48491006 to 48491011 5 + TSS region transcription start site region 119659
Tssr119660 13 48491032 to 48491047 15 + TSS region transcription start site region 119660
Tssr119661 13 48491060 to 48491065 5 + TSS region transcription start site region 119661
Gm36402 13 48491403 to 48505499 14096 + lncRNA gene predicted gene, 36402
Cpgi5562 13 48513202 to 48513690 488 CpG island CpG island 5562
Tssr122385 13 48513394 to 48513452 58 - TSS region transcription start site region 122385
A830005F24Rik 13 48513570 to 48514859 1289 + protein coding gene RIKEN cDNA A830005F24 gene
6720427I07Rik 13 48532905 to 48546500 13595 - lincRNA gene RIKEN cDNA 6720427I07 gene
Mirc8 13 48536012 to 48538272 2260 complex/cluster/region microRNA cluster 8, including Mirlet7d, Mirlet7f-1, and Mirlet7a-1
Mirlet7d 13 48536012 to 48536114 102 - miRNA gene microRNA let7d
Tssr122386 13 48536018 to 48536023 5 - TSS region transcription start site region 122386
Gm24111 13 48537825 to 48537921 96 + miRNA gene predicted gene, 24111
Tssr122387 13 48537827 to 48537834 7 - TSS region transcription start site region 122387
Mirlet7f-1 13 48537829 to 48537917 88 - miRNA gene microRNA let7f-1
Mirlet7a-1 13 48538179 to 48538272 93 - miRNA gene microRNA let7a-1
Tssr122388 13 48538184 to 48538190 6 - TSS region transcription start site region 122388
Gm37238 13 48542644 to 48545033 2389 - unclassified gene predicted gene, 37238
Cpgi5563 13 48545397 to 48546971 1574 CpG island CpG island 5563
Tssr122389 13 48545743 to 48545758 15 - TSS region transcription start site region 122389
Tssr122390 13 48546452 to 48546465 13 - TSS region transcription start site region 122390
Tssr122391 13 48546470 to 48546492 22 - TSS region transcription start site region 122391
Tssr122392 13 48546493 to 48546524 31 - TSS region transcription start site region 122392
Tssr119662 13 48550808 to 48550845 37 + TSS region transcription start site region 119662
Tssr122393 13 48552319 to 48552330 11 - TSS region transcription start site region 122393
Tssr122394 13 48554712 to 48554723 11 - TSS region transcription start site region 122394
Gm25232 13 48572253 to 48572384 131 - snoRNA gene predicted gene, 25232
D13Mit95 13 48577260 to 48577350 90 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 95
Ptpdc1 13 48577872 to 48625664 47792 - protein coding gene protein tyrosine phosphatase domain containing 1
Tssr122395 13 48593363 to 48593400 37 - TSS region transcription start site region 122395
Gm36550 13 48593501 to 48595843 2342 + antisense lncRNA gene predicted gene, 36550
Cpgi5564 13 48625136 to 48626061 925 CpG island CpG island 5564
Tssr122396 13 48625504 to 48625564 60 - TSS region transcription start site region 122396
Tssr122397 13 48625571 to 48625594 23 - TSS region transcription start site region 122397
Tssr122398 13 48625596 to 48625618 22 - TSS region transcription start site region 122398
Gm36606 13 48652722 to 48662831 10109 - lncRNA gene predicted gene, 36606
Cpgi5565 13 48658515 to 48659069 554 CpG island CpG island 5565
Cpgi5566 13 48659799 to 48660193 394 CpG island CpG island 5566
Cpgi5567 13 48662285 to 48663991 1706 CpG island CpG island 5567
Tssr119663 13 48662525 to 48662539 14 + TSS region transcription start site region 119663
Tssr122399 13 48662703 to 48662748 45 - TSS region transcription start site region 122399
Tssr119664 13 48662885 to 48662888 3 + TSS region transcription start site region 119664
Tssr119665 13 48662907 to 48662922 15 + TSS region transcription start site region 119665
Tssr119666 13 48662959 to 48662966 7 + TSS region transcription start site region 119666
Tssr119667 13 48662989 to 48663046 57 + TSS region transcription start site region 119667
Barx1 13 48663036 to 48666507 3471 + protein coding gene BarH-like homeobox 1
Tssr119668 13 48663062 to 48663074 12 + TSS region transcription start site region 119668
Cpgi5568 13 48664886 to 48665453 567 CpG island CpG island 5568
Cpgi5569 13 48665504 to 48666433 929 CpG island CpG island 5569
Cpgi5570 13 48668403 to 48669574 1171 CpG island CpG island 5570
Cpgi5571 13 48672525 to 48672765 240 CpG island CpG island 5571
Gm36784 13 48708189 to 48734084 25895 + lncRNA gene predicted gene, 36784
Cpgi5572 13 48717234 to 48717466 232 CpG island CpG island 5572
Cpgi5573 13 48731146 to 48732140 994 CpG island CpG island 5573
Cpgi5574 13 48732631 to 48733061 430 CpG island CpG island 5574
D13Mit269 13 48749733 to 48749848 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 269
Rpl17-ps6 13 48763088 to 48763610 522 - pseudogene ribosomal protein L17, pseudogene 6
Phf2 13 48801750 to 48870885 69135 - protein coding gene PHD finger protein 2
Tssr122400 13 48819680 to 48819694 14 - TSS region transcription start site region 122400
Tssr122401 13 48819701 to 48819713 12 - TSS region transcription start site region 122401
Tssr122402 13 48819716 to 48819738 22 - TSS region transcription start site region 122402
Tssr122403 13 48819749 to 48819753 4 - TSS region transcription start site region 122403
D13Mit120 13 48829584 to 48829716 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 120
Tssr122404 13 48863654 to 48863679 25 - TSS region transcription start site region 122404
Cpgi5575 13 48869780 to 48871756 1976 CpG island CpG island 5575
Tssr119669 13 48870050 to 48870066 16 + TSS region transcription start site region 119669
Tssr119670 13 48870074 to 48870091 17 + TSS region transcription start site region 119670
Tssr122405 13 48870889 to 48870951 62 - TSS region transcription start site region 122405
Tssr122406 13 48871006 to 48871020 14 - TSS region transcription start site region 122406
Tssr122407 13 48871036 to 48871071 35 - TSS region transcription start site region 122407
Tssr122408 13 48871106 to 48871159 53 - TSS region transcription start site region 122408
Phf2os1 13 48871112 to 48875460 4348 + antisense lncRNA gene PHD finger protein 2, opposite strand 1
Tssr122409 13 48871689 to 48871706 17 - TSS region transcription start site region 122409
Tssr122410 13 48871712 to 48871725 13 - TSS region transcription start site region 122410
Tssr122411 13 48871754 to 48871770 16 - TSS region transcription start site region 122411
Tssr122412 13 48872466 to 48872491 25 - TSS region transcription start site region 122412
Cpgi5576 13 48878376 to 48879047 671 CpG island CpG island 5576
Tssr122413 13 48878656 to 48878669 13 - TSS region transcription start site region 122413
Fam120a 13 48879216 to 48967877 88661 - protein coding gene family with sequence similarity 120, member A
Tssr122414 13 48880013 to 48880052 39 - TSS region transcription start site region 122414
Tssr122415 13 48880142 to 48880147 5 - TSS region transcription start site region 122415
Tssr122416 13 48880306 to 48880328 22 - TSS region transcription start site region 122416
Tssr122417 13 48880439 to 48880455 16 - TSS region transcription start site region 122417
Tssr122418 13 48880672 to 48880689 17 - TSS region transcription start site region 122418
Tssr122419 13 48922199 to 48922218 19 - TSS region transcription start site region 122419
Tssr122420 13 48935128 to 48935138 10 - TSS region transcription start site region 122420
Tssr122421 13 48949141 to 48949157 16 - TSS region transcription start site region 122421
Cpgi5577 13 48966892 to 48968857 1965 CpG island CpG island 5577
Tssr122422 13 48968004 to 48968029 25 - TSS region transcription start site region 122422
Tssr122423 13 48968034 to 48968068 34 - TSS region transcription start site region 122423
Tssr122424 13 48968077 to 48968082 5 - TSS region transcription start site region 122424
Fam120aos 13 48968112 to 48969905 1793 + lincRNA gene family with sequence similarity 120A, opposite strand
Tssr122425 13 48968115 to 48968124 9 - TSS region transcription start site region 122425
Tssr119671 13 48968161 to 48968216 55 + TSS region transcription start site region 119671
Tssr122426 13 48968209 to 48968220 11 - TSS region transcription start site region 122426
Tssr4062 13 48968236 to 48968251 15 - TSS region transcription start site region 4062
Tssr4063 13 48968276 to 48968286 10 - TSS region transcription start site region 4063
Tssr119672 13 48968324 to 48968355 31 + TSS region transcription start site region 119672
Tssr119673 13 48968367 to 48968430 63 + TSS region transcription start site region 119673
Tssr122427 13 48968421 to 48968466 45 - TSS region transcription start site region 122427
Tssr122428 13 48968478 to 48968489 11 - TSS region transcription start site region 122428
Tssr122429 13 48968756 to 48968759 3 - TSS region transcription start site region 122429
Tssr119674 13 48968900 to 48968904 4 + TSS region transcription start site region 119674
Tssr119675 13 48969011 to 48969023 12 + TSS region transcription start site region 119675
Tssr119676 13 48969088 to 48969111 23 + TSS region transcription start site region 119676
Tssr122430 13 48971202 to 48971205 3 - TSS region transcription start site region 122430
Gm18312 13 48978708 to 48981240 2532 - pseudogene predicted gene, 18312
D13Mit268 13 49002994 to 49003134 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 268
Tssr119677 13 49013753 to 49013765 12 + TSS region transcription start site region 119677
Tssr122431 13 49014583 to 49014623 40 - TSS region transcription start site region 122431
Tssr122432 13 49015283 to 49015292 9 - TSS region transcription start site region 122432
Tssr122433 13 49015477 to 49015497 20 - TSS region transcription start site region 122433
Cpgi5578 13 49016180 to 49016554 374 CpG island CpG island 5578
Wnk2 13 49036303 to 49148014 111711 - protein coding gene WNK lysine deficient protein kinase 2
Tssr122434 13 49043918 to 49043927 9 - TSS region transcription start site region 122434
Tssr122435 13 49062439 to 49062443 4 - TSS region transcription start site region 122435
Tssr122436 13 49127869 to 49127883 14 - TSS region transcription start site region 122436
Cpgi5579 13 49146247 to 49148515 2268 CpG island CpG island 5579
Tssr122437 13 49147666 to 49147684 18 - TSS region transcription start site region 122437
Tssr122438 13 49147931 to 49148037 106 - TSS region transcription start site region 122438
D13Mit93 13 49158030 to 49158163 133 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 93
Gm40942 13 49161905 to 49163639 1734 - lncRNA gene predicted gene, 40942
Tssr122439 13 49168273 to 49168316 43 - TSS region transcription start site region 122439
Gm40943 13 49169808 to 49183825 14017 - lncRNA gene predicted gene, 40943
Tssr122440 13 49183719 to 49183732 13 - TSS region transcription start site region 122440
Tssr122441 13 49183789 to 49183800 11 - TSS region transcription start site region 122441
Tssr122442 13 49183848 to 49183857 9 - TSS region transcription start site region 122442
Tssr122443 13 49183928 to 49183957 29 - TSS region transcription start site region 122443
Tssr122444 13 49183968 to 49183975 7 - TSS region transcription start site region 122444