Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:47085330-48893608

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dek 13 47084775 to 47106201 21426 - protein coding gene DEK oncogene (DNA binding)
Tssr122363 13 47098241 to 47098276 35 - TSS region transcription start site region 122363
Tssr122364 13 47099372 to 47099387 15 - TSS region transcription start site region 122364
Tssr122365 13 47099397 to 47099434 37 - TSS region transcription start site region 122365
Tssr122366 13 47100205 to 47100216 11 - TSS region transcription start site region 122366
Tssr122367 13 47100219 to 47100253 34 - TSS region transcription start site region 122367
Tssr122368 13 47100268 to 47100273 5 - TSS region transcription start site region 122368
Tssr119625 13 47102006 to 47102054 48 + TSS region transcription start site region 119625
Cpgi5551 13 47105318 to 47106860 1542 CpG island CpG island 5551
Tssr122369 13 47105374 to 47105377 3 - TSS region transcription start site region 122369
Tssr122370 13 47105521 to 47105524 3 - TSS region transcription start site region 122370
Tssr119626 13 47105572 to 47105592 20 + TSS region transcription start site region 119626
Tssr122371 13 47105608 to 47105622 14 - TSS region transcription start site region 122371
Tssr122372 13 47105684 to 47105702 18 - TSS region transcription start site region 122372
Tssr122373 13 47105733 to 47105747 14 - TSS region transcription start site region 122373
Tssr122374 13 47105790 to 47105875 85 - TSS region transcription start site region 122374
Tssr122375 13 47106101 to 47106110 9 - TSS region transcription start site region 122375
Tssr122376 13 47106119 to 47106128 9 - TSS region transcription start site region 122376
Tssr122377 13 47106144 to 47106171 27 - TSS region transcription start site region 122377
Tssr122378 13 47106176 to 47106206 30 - TSS region transcription start site region 122378
Tssr122379 13 47106209 to 47106221 12 - TSS region transcription start site region 122379
Tssr122380 13 47106222 to 47106233 11 - TSS region transcription start site region 122380
Tssr119627 13 47106401 to 47106411 10 + TSS region transcription start site region 119627
Tssr119628 13 47106413 to 47106430 17 + TSS region transcription start site region 119628
1700026N04Rik 13 47106419 to 47109519 3100 + bidirectional promoter lncRNA gene RIKEN cDNA 1700026N04 gene
D13Dcr9 13 47111365 to 47111460 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 9
Gm40935 13 47115684 to 47132081 16397 - lncRNA gene predicted gene, 40935
Cpgi5552 13 47122500 to 47123237 737 CpG island CpG island 5552
Tssr119629 13 47122688 to 47122715 27 + TSS region transcription start site region 119629
Tssr119630 13 47122719 to 47122761 42 + TSS region transcription start site region 119630
Rnf144b 13 47122720 to 47247991 125271 + protein coding gene ring finger protein 144B
Lfibq9 13 47129920 to 47675890 545970 QTL liver fibrosis QTL 9
A930002C04Rik 13 47143942 to 47148670 4728 - antisense lncRNA gene RIKEN cDNA A930002C04 gene
Gm48581 13 47152357 to 47155008 2651 - unclassified gene predicted gene, 48581
Cpgi5553 13 47158784 to 47158992 208 CpG island CpG island 5553
Cpgi5554 13 47193643 to 47194270 627 CpG island CpG island 5554
Tssr119631 13 47193833 to 47193838 5 + TSS region transcription start site region 119631
Tssr119632 13 47193849 to 47193868 19 + TSS region transcription start site region 119632
Tssr119633 13 47193871 to 47193882 11 + TSS region transcription start site region 119633
Tssr119634 13 47193915 to 47193926 11 + TSS region transcription start site region 119634
Tssr119635 13 47193942 to 47194010 68 + TSS region transcription start site region 119635
Tssr119636 13 47194011 to 47194014 3 + TSS region transcription start site region 119636
Tssr119637 13 47194039 to 47194046 7 + TSS region transcription start site region 119637
Tssr119638 13 47194061 to 47194070 9 + TSS region transcription start site region 119638
Tssr119639 13 47195812 to 47195814 2 + TSS region transcription start site region 119639
Tssr119640 13 47201518 to 47201528 10 + TSS region transcription start site region 119640
Tssr119641 13 47201597 to 47201612 15 + TSS region transcription start site region 119641
Tssr119642 13 47201635 to 47201646 11 + TSS region transcription start site region 119642
Tssr119643 13 47201661 to 47201673 12 + TSS region transcription start site region 119643
Tssr119644 13 47207440 to 47207468 28 + TSS region transcription start site region 119644
Tssr119645 13 47209023 to 47209027 4 + TSS region transcription start site region 119645
Tssr119646 13 47210844 to 47210848 4 + TSS region transcription start site region 119646
Tssr119647 13 47211350 to 47211353 3 + TSS region transcription start site region 119647
Gm40934 13 47219526 to 47224544 5018 - lncRNA gene predicted gene, 40934
Tssr119648 13 47225560 to 47225566 6 + TSS region transcription start site region 119648
Tssr119649 13 47228498 to 47228508 10 + TSS region transcription start site region 119649
Tssr119650 13 47239988 to 47239993 5 + TSS region transcription start site region 119650
Tssr119651 13 47246936 to 47246951 15 + TSS region transcription start site region 119651
Tssr119652 13 47246981 to 47246990 9 + TSS region transcription start site region 119652
Tssr119653 13 47247621 to 47247627 6 + TSS region transcription start site region 119653
Tssr122381 13 47274493 to 47274500 7 - TSS region transcription start site region 122381
Gm48612 13 47335251 to 47340939 5688 - lincRNA gene predicted gene, 48612
AA517650 13 47359428 to 47359700 272 unclassified gene expressed sequence AA517650
Gm35733 13 47438680 to 47439339 659 + lincRNA gene predicted gene, 35733
Gm40936 13 47461264 to 47464280 3016 + lncRNA gene predicted gene, 40936
Cpgi5555 13 47469024 to 47469176 152 CpG island CpG island 5555
D13Dcr10 13 47582044 to 47582140 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 10
D13Mit90 13 47638768 to 47639023 255 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 90
4930471G24Rik 13 47667550 to 47668392 842 + lincRNA gene RIKEN cDNA 4930471G24 gene
D13Mit94 13 47715648 to 47715795 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 94
Gm35928 13 47784231 to 47789591 5360 - lncRNA gene predicted gene, 35928
Chol18 13 47815991 to 47815991 0 QTL cholesterol 18
Chol15 13 47815991 to 47815991 0 QTL cholesterol 15
Gm35991 13 47843815 to 47851943 8128 + lncRNA gene predicted gene, 35991
D13Mit309 13 47844474 to 47844592 118 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 309
D13Mit309.2 13 47844572 to 47844760 188 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 309.2
D13Mit199 13 47846576 to 47846724 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 199
Gm40938 13 47902558 to 47948474 45916 - lncRNA gene predicted gene, 40938
G630093K05Rik 13 47910435 to 47934301 23866 + lincRNA gene RIKEN cDNA G630093K05 gene
4931429P17Rik 13 47960330 to 48018608 58278 - lincRNA gene RIKEN cDNA 4931429P17 gene
Twq4 13 47975634 to 47975634 0 QTL testis weight QTL 4
Tssr122382 13 47992392 to 47992406 14 - TSS region transcription start site region 122382
Gm36101 13 48031773 to 48042471 10698 + lincRNA gene predicted gene, 36101
Tssr119654 13 48031839 to 48031856 17 + TSS region transcription start site region 119654
A330033J07Rik 13 48044231 to 48262623 218392 - antisense lncRNA gene RIKEN cDNA A330033J07 gene
Cpgi5556 13 48046412 to 48046608 196 CpG island CpG island 5556
Cpgi5557 13 48082389 to 48082630 241 CpG island CpG island 5557
Cpgi5558 13 48086771 to 48087019 248 CpG island CpG island 5558
Gm36346 13 48107897 to 48111641 3744 - lincRNA gene predicted gene, 36346
Gm36183 13 48227702 to 48241412 13710 + lncRNA gene predicted gene, 36183
Cpgi5559 13 48227722 to 48228149 427 CpG island CpG island 5559
Gm49291 13 48239054 to 48262591 23537 - lincRNA gene predicted gene, 49291
Gm40939 13 48242373 to 48253779 11406 + lncRNA gene predicted gene, 40939
Cpgi5560 13 48260595 to 48262915 2320 CpG island CpG island 5560
Tssr119655 13 48261081 to 48261091 10 + TSS region transcription start site region 119655
Tssr119656 13 48261106 to 48261123 17 + TSS region transcription start site region 119656
Tssr119657 13 48261161 to 48261168 7 + TSS region transcription start site region 119657
Tssr119658 13 48261194 to 48261199 5 + TSS region transcription start site region 119658
Id4 13 48261427 to 48264036 2609 + protein coding gene inhibitor of DNA binding 4
A330048O09Rik 13 48272418 to 48273884 1466 - lincRNA gene RIKEN cDNA A330048O09 gene
Tssr122383 13 48273865 to 48273909 44 - TSS region transcription start site region 122383
Gm8588 13 48312670 to 48314251 1581 + pseudogene predicted gene 8588
Tssr122384 13 48314606 to 48314616 10 - TSS region transcription start site region 122384
Gm48648 13 48359459 to 48408512 49053 - lincRNA gene predicted gene, 48648
Gm40940 13 48439665 to 48446672 7007 - lncRNA gene predicted gene, 40940
Gm40941 13 48465810 to 48477602 11792 - lncRNA gene predicted gene, 40941
Zfp169 13 48487647 to 48513451 25804 - protein coding gene zinc finger protein 169
Cpgi5561 13 48490421 to 48490900 479 CpG island CpG island 5561
Tssr119659 13 48491006 to 48491011 5 + TSS region transcription start site region 119659
Tssr119660 13 48491032 to 48491047 15 + TSS region transcription start site region 119660
Tssr119661 13 48491060 to 48491065 5 + TSS region transcription start site region 119661
Gm36402 13 48491403 to 48505499 14096 + lncRNA gene predicted gene, 36402
Cpgi5562 13 48513202 to 48513690 488 CpG island CpG island 5562
Tssr122385 13 48513394 to 48513452 58 - TSS region transcription start site region 122385
A830005F24Rik 13 48513570 to 48514859 1289 + protein coding gene RIKEN cDNA A830005F24 gene
6720427I07Rik 13 48532905 to 48546500 13595 - lincRNA gene RIKEN cDNA 6720427I07 gene
Mirlet7d 13 48536012 to 48536114 102 - miRNA gene microRNA let7d
Mirc8 13 48536012 to 48538272 2260 complex/cluster/region microRNA cluster 8, including Mirlet7d, Mirlet7f-1, and Mirlet7a-1
Tssr122386 13 48536018 to 48536023 5 - TSS region transcription start site region 122386
Gm24111 13 48537825 to 48537921 96 + miRNA gene predicted gene, 24111
Tssr122387 13 48537827 to 48537834 7 - TSS region transcription start site region 122387
Mirlet7f-1 13 48537829 to 48537917 88 - miRNA gene microRNA let7f-1
Mirlet7a-1 13 48538179 to 48538272 93 - miRNA gene microRNA let7a-1
Tssr122388 13 48538184 to 48538190 6 - TSS region transcription start site region 122388
Gm37238 13 48542644 to 48545033 2389 - unclassified gene predicted gene, 37238
Cpgi5563 13 48545397 to 48546971 1574 CpG island CpG island 5563
Tssr122389 13 48545743 to 48545758 15 - TSS region transcription start site region 122389
Tssr122390 13 48546452 to 48546465 13 - TSS region transcription start site region 122390
Tssr122391 13 48546470 to 48546492 22 - TSS region transcription start site region 122391
Tssr122392 13 48546493 to 48546524 31 - TSS region transcription start site region 122392
Tssr119662 13 48550808 to 48550845 37 + TSS region transcription start site region 119662
Tssr122393 13 48552319 to 48552330 11 - TSS region transcription start site region 122393
Tssr122394 13 48554712 to 48554723 11 - TSS region transcription start site region 122394
Gm25232 13 48572253 to 48572384 131 - snoRNA gene predicted gene, 25232
D13Mit95 13 48577260 to 48577350 90 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 95
Ptpdc1 13 48577872 to 48625664 47792 - protein coding gene protein tyrosine phosphatase domain containing 1
Tssr122395 13 48593363 to 48593400 37 - TSS region transcription start site region 122395
Gm36550 13 48593501 to 48595843 2342 + antisense lncRNA gene predicted gene, 36550
Cpgi5564 13 48625136 to 48626061 925 CpG island CpG island 5564
Tssr122396 13 48625504 to 48625564 60 - TSS region transcription start site region 122396
Tssr122397 13 48625571 to 48625594 23 - TSS region transcription start site region 122397
Tssr122398 13 48625596 to 48625618 22 - TSS region transcription start site region 122398
Gm36606 13 48652722 to 48662831 10109 - lncRNA gene predicted gene, 36606
Cpgi5565 13 48658515 to 48659069 554 CpG island CpG island 5565
Cpgi5566 13 48659799 to 48660193 394 CpG island CpG island 5566
Cpgi5567 13 48662285 to 48663991 1706 CpG island CpG island 5567
Tssr119663 13 48662525 to 48662539 14 + TSS region transcription start site region 119663
Tssr122399 13 48662703 to 48662748 45 - TSS region transcription start site region 122399
Tssr119664 13 48662885 to 48662888 3 + TSS region transcription start site region 119664
Tssr119665 13 48662907 to 48662922 15 + TSS region transcription start site region 119665
Tssr119666 13 48662959 to 48662966 7 + TSS region transcription start site region 119666
Tssr119667 13 48662989 to 48663046 57 + TSS region transcription start site region 119667
Barx1 13 48663036 to 48666507 3471 + protein coding gene BarH-like homeobox 1
Tssr119668 13 48663062 to 48663074 12 + TSS region transcription start site region 119668
Cpgi5568 13 48664886 to 48665453 567 CpG island CpG island 5568
Cpgi5569 13 48665504 to 48666433 929 CpG island CpG island 5569
Cpgi5570 13 48668403 to 48669574 1171 CpG island CpG island 5570
Cpgi5571 13 48672525 to 48672765 240 CpG island CpG island 5571
Gm36784 13 48708189 to 48734084 25895 + lncRNA gene predicted gene, 36784
Cpgi5572 13 48717234 to 48717466 232 CpG island CpG island 5572
Cpgi5573 13 48731146 to 48732140 994 CpG island CpG island 5573
Cpgi5574 13 48732631 to 48733061 430 CpG island CpG island 5574
D13Mit269 13 48749733 to 48749848 115 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 269
Rpl17-ps6 13 48763088 to 48763610 522 - pseudogene ribosomal protein L17, pseudogene 6
Phf2 13 48801750 to 48870885 69135 - protein coding gene PHD finger protein 2
Tssr122400 13 48819680 to 48819694 14 - TSS region transcription start site region 122400
Tssr122401 13 48819701 to 48819713 12 - TSS region transcription start site region 122401
Tssr122402 13 48819716 to 48819738 22 - TSS region transcription start site region 122402
Tssr122403 13 48819749 to 48819753 4 - TSS region transcription start site region 122403
D13Mit120 13 48829584 to 48829716 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 120
Tssr122404 13 48863654 to 48863679 25 - TSS region transcription start site region 122404
Cpgi5575 13 48869780 to 48871756 1976 CpG island CpG island 5575
Tssr119669 13 48870050 to 48870066 16 + TSS region transcription start site region 119669
Tssr119670 13 48870074 to 48870091 17 + TSS region transcription start site region 119670
Tssr122405 13 48870889 to 48870951 62 - TSS region transcription start site region 122405
Tssr122406 13 48871006 to 48871020 14 - TSS region transcription start site region 122406
Tssr122407 13 48871036 to 48871071 35 - TSS region transcription start site region 122407
Tssr122408 13 48871106 to 48871159 53 - TSS region transcription start site region 122408
Phf2os1 13 48871112 to 48875460 4348 + antisense lncRNA gene PHD finger protein 2, opposite strand 1
Tssr122409 13 48871689 to 48871706 17 - TSS region transcription start site region 122409
Tssr122410 13 48871712 to 48871725 13 - TSS region transcription start site region 122410
Tssr122411 13 48871754 to 48871770 16 - TSS region transcription start site region 122411
Tssr122412 13 48872466 to 48872491 25 - TSS region transcription start site region 122412
Cpgi5576 13 48878376 to 48879047 671 CpG island CpG island 5576
Tssr122413 13 48878656 to 48878669 13 - TSS region transcription start site region 122413
Fam120a 13 48879216 to 48967877 88661 - protein coding gene family with sequence similarity 120, member A
Tssr122414 13 48880013 to 48880052 39 - TSS region transcription start site region 122414
Tssr122415 13 48880142 to 48880147 5 - TSS region transcription start site region 122415
Tssr122416 13 48880306 to 48880328 22 - TSS region transcription start site region 122416
Tssr122417 13 48880439 to 48880455 16 - TSS region transcription start site region 122417
Tssr122418 13 48880672 to 48880689 17 - TSS region transcription start site region 122418