Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:47068680-47809339

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdm1b 13 47043499 to 47085279 41780 + protein coding gene lysine (K)-specific demethylase 1B
Dek 13 47084775 to 47106201 21426 - protein coding gene DEK oncogene (DNA binding)
Tssr122363 13 47098241 to 47098276 35 - TSS region transcription start site region 122363
Tssr122364 13 47099372 to 47099387 15 - TSS region transcription start site region 122364
Tssr122365 13 47099397 to 47099434 37 - TSS region transcription start site region 122365
Tssr122366 13 47100205 to 47100216 11 - TSS region transcription start site region 122366
Tssr122367 13 47100219 to 47100253 34 - TSS region transcription start site region 122367
Tssr122368 13 47100268 to 47100273 5 - TSS region transcription start site region 122368
Tssr119625 13 47102006 to 47102054 48 + TSS region transcription start site region 119625
Cpgi5551 13 47105318 to 47106860 1542 CpG island CpG island 5551
Tssr122369 13 47105374 to 47105377 3 - TSS region transcription start site region 122369
Tssr122370 13 47105521 to 47105524 3 - TSS region transcription start site region 122370
Tssr119626 13 47105572 to 47105592 20 + TSS region transcription start site region 119626
Tssr122371 13 47105608 to 47105622 14 - TSS region transcription start site region 122371
Tssr122372 13 47105684 to 47105702 18 - TSS region transcription start site region 122372
Tssr122373 13 47105733 to 47105747 14 - TSS region transcription start site region 122373
Tssr122374 13 47105790 to 47105875 85 - TSS region transcription start site region 122374
Tssr122375 13 47106101 to 47106110 9 - TSS region transcription start site region 122375
Tssr122376 13 47106119 to 47106128 9 - TSS region transcription start site region 122376
Tssr122377 13 47106144 to 47106171 27 - TSS region transcription start site region 122377
Tssr122378 13 47106176 to 47106206 30 - TSS region transcription start site region 122378
Tssr122379 13 47106209 to 47106221 12 - TSS region transcription start site region 122379
Tssr122380 13 47106222 to 47106233 11 - TSS region transcription start site region 122380
Tssr119627 13 47106401 to 47106411 10 + TSS region transcription start site region 119627
Tssr119628 13 47106413 to 47106430 17 + TSS region transcription start site region 119628
1700026N04Rik 13 47106419 to 47109519 3100 + bidirectional promoter lncRNA gene RIKEN cDNA 1700026N04 gene
D13Dcr9 13 47111365 to 47111460 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 9
Gm40935 13 47115684 to 47132081 16397 - lncRNA gene predicted gene, 40935
Cpgi5552 13 47122500 to 47123237 737 CpG island CpG island 5552
Tssr119629 13 47122688 to 47122715 27 + TSS region transcription start site region 119629
Tssr119630 13 47122719 to 47122761 42 + TSS region transcription start site region 119630
Rnf144b 13 47122720 to 47247991 125271 + protein coding gene ring finger protein 144B
Lfibq9 13 47129920 to 47675890 545970 QTL liver fibrosis QTL 9
A930002C04Rik 13 47143942 to 47148670 4728 - antisense lncRNA gene RIKEN cDNA A930002C04 gene
Gm48581 13 47152357 to 47155008 2651 - unclassified gene predicted gene, 48581
Cpgi5553 13 47158784 to 47158992 208 CpG island CpG island 5553
Cpgi5554 13 47193643 to 47194270 627 CpG island CpG island 5554
Tssr119631 13 47193833 to 47193838 5 + TSS region transcription start site region 119631
Tssr119632 13 47193849 to 47193868 19 + TSS region transcription start site region 119632
Tssr119633 13 47193871 to 47193882 11 + TSS region transcription start site region 119633
Tssr119634 13 47193915 to 47193926 11 + TSS region transcription start site region 119634
Tssr119635 13 47193942 to 47194010 68 + TSS region transcription start site region 119635
Tssr119636 13 47194011 to 47194014 3 + TSS region transcription start site region 119636
Tssr119637 13 47194039 to 47194046 7 + TSS region transcription start site region 119637
Tssr119638 13 47194061 to 47194070 9 + TSS region transcription start site region 119638
Tssr119639 13 47195812 to 47195814 2 + TSS region transcription start site region 119639
Tssr119640 13 47201518 to 47201528 10 + TSS region transcription start site region 119640
Tssr119641 13 47201597 to 47201612 15 + TSS region transcription start site region 119641
Tssr119642 13 47201635 to 47201646 11 + TSS region transcription start site region 119642
Tssr119643 13 47201661 to 47201673 12 + TSS region transcription start site region 119643
Tssr119644 13 47207440 to 47207468 28 + TSS region transcription start site region 119644
Tssr119645 13 47209023 to 47209027 4 + TSS region transcription start site region 119645
Tssr119646 13 47210844 to 47210848 4 + TSS region transcription start site region 119646
Tssr119647 13 47211350 to 47211353 3 + TSS region transcription start site region 119647
Gm40934 13 47219526 to 47224544 5018 - lncRNA gene predicted gene, 40934
Tssr119648 13 47225560 to 47225566 6 + TSS region transcription start site region 119648
Tssr119649 13 47228498 to 47228508 10 + TSS region transcription start site region 119649
Tssr119650 13 47239988 to 47239993 5 + TSS region transcription start site region 119650
Tssr119651 13 47246936 to 47246951 15 + TSS region transcription start site region 119651
Tssr119652 13 47246981 to 47246990 9 + TSS region transcription start site region 119652
Tssr119653 13 47247621 to 47247627 6 + TSS region transcription start site region 119653
Tssr122381 13 47274493 to 47274500 7 - TSS region transcription start site region 122381
Gm48612 13 47335251 to 47340939 5688 - lincRNA gene predicted gene, 48612
AA517650 13 47359428 to 47359700 272 unclassified gene expressed sequence AA517650
Gm35733 13 47438680 to 47439339 659 + lincRNA gene predicted gene, 35733
Gm40936 13 47461264 to 47464280 3016 + lncRNA gene predicted gene, 40936
Cpgi5555 13 47469024 to 47469176 152 CpG island CpG island 5555
D13Dcr10 13 47582044 to 47582140 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 10
D13Mit90 13 47638768 to 47639023 255 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 90
4930471G24Rik 13 47667550 to 47668392 842 + lincRNA gene RIKEN cDNA 4930471G24 gene
D13Mit94 13 47715648 to 47715795 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 94
Gm35928 13 47784231 to 47789591 5360 - lncRNA gene predicted gene, 35928