Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:46860396-47161105

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kif13a 13 46749087 to 46929867 180780 - protein coding gene kinesin family member 13A
Gm48250 13 46881027 to 46884898 3871 + antisense lncRNA gene predicted gene, 48250
Gm22960 13 46902589 to 46902692 103 + snRNA gene predicted gene, 22960
Cpgi5547 13 46929003 to 46931055 2052 CpG island CpG island 5547
Tssr122356 13 46929724 to 46929800 76 - TSS region transcription start site region 122356
Tssr122357 13 46929802 to 46929829 27 - TSS region transcription start site region 122357
Tssr119615 13 46929850 to 46929873 23 + TSS region transcription start site region 119615
Tssr122358 13 46930206 to 46930217 11 - TSS region transcription start site region 122358
Tssr119616 13 46944821 to 46944856 35 + TSS region transcription start site region 119616
Gm48325 13 46945190 to 46945693 503 - pseudogene predicted gene, 48325
Tssr119617 13 46966669 to 46966679 10 + TSS region transcription start site region 119617
Tssr4061 13 46968463 to 46968498 35 + TSS region transcription start site region 4061
2010001K21Rik 13 46979908 to 47011195 31287 + unclassified non-coding RNA gene RIKEN cDNA 2010001K21 gene
Gm24769 13 46980720 to 46980848 128 + snoRNA gene predicted gene, 24769
Tssr119618 13 46986437 to 46986464 27 + TSS region transcription start site region 119618
Tssr119619 13 47000105 to 47000131 26 + TSS region transcription start site region 119619
Gm5790 13 47009533 to 47010945 1412 - pseudogene predicted gene 5790
Cpgi5548 13 47010396 to 47011105 709 CpG island CpG island 5548
Tssr122359 13 47010764 to 47010777 13 - TSS region transcription start site region 122359
Tssr122360 13 47011037 to 47011061 24 - TSS region transcription start site region 122360
Nhlrc1 13 47012557 to 47014850 2293 - protein coding gene NHL repeat containing 1
Cpgi5549 13 47013843 to 47015128 1285 CpG island CpG island 5549
Tssr122361 13 47014814 to 47014863 49 - TSS region transcription start site region 122361
Tpmt 13 47021987 to 47043338 21351 - protein coding gene thiopurine methyltransferase
Gm18807 13 47024346 to 47024986 640 + pseudogene predicted gene, 18807
Tssr122362 13 47043116 to 47043186 70 - TSS region transcription start site region 122362
Cpgi5550 13 47043132 to 47044735 1603 CpG island CpG island 5550
Kdm1b 13 47043499 to 47085279 41780 + protein coding gene lysine (K)-specific demethylase 1B
Tssr119620 13 47043527 to 47043591 64 + TSS region transcription start site region 119620
Tssr119621 13 47043881 to 47043905 24 + TSS region transcription start site region 119621
Tssr119622 13 47066392 to 47066401 9 + TSS region transcription start site region 119622
Tssr119623 13 47066431 to 47066442 11 + TSS region transcription start site region 119623
Tssr119624 13 47066448 to 47066463 15 + TSS region transcription start site region 119624
Dek 13 47084775 to 47106201 21426 - protein coding gene DEK oncogene (DNA binding)
Tssr122363 13 47098241 to 47098276 35 - TSS region transcription start site region 122363
Tssr122364 13 47099372 to 47099387 15 - TSS region transcription start site region 122364
Tssr122365 13 47099397 to 47099434 37 - TSS region transcription start site region 122365
Tssr122366 13 47100205 to 47100216 11 - TSS region transcription start site region 122366
Tssr122367 13 47100219 to 47100253 34 - TSS region transcription start site region 122367
Tssr122368 13 47100268 to 47100273 5 - TSS region transcription start site region 122368
Tssr119625 13 47102006 to 47102054 48 + TSS region transcription start site region 119625
Cpgi5551 13 47105318 to 47106860 1542 CpG island CpG island 5551
Tssr122369 13 47105374 to 47105377 3 - TSS region transcription start site region 122369
Tssr122370 13 47105521 to 47105524 3 - TSS region transcription start site region 122370
Tssr119626 13 47105572 to 47105592 20 + TSS region transcription start site region 119626
Tssr122371 13 47105608 to 47105622 14 - TSS region transcription start site region 122371
Tssr122372 13 47105684 to 47105702 18 - TSS region transcription start site region 122372
Tssr122373 13 47105733 to 47105747 14 - TSS region transcription start site region 122373
Tssr122374 13 47105790 to 47105875 85 - TSS region transcription start site region 122374
Tssr122375 13 47106101 to 47106110 9 - TSS region transcription start site region 122375
Tssr122376 13 47106119 to 47106128 9 - TSS region transcription start site region 122376
Tssr122377 13 47106144 to 47106171 27 - TSS region transcription start site region 122377
Tssr122378 13 47106176 to 47106206 30 - TSS region transcription start site region 122378
Tssr122379 13 47106209 to 47106221 12 - TSS region transcription start site region 122379
Tssr122380 13 47106222 to 47106233 11 - TSS region transcription start site region 122380
Tssr119627 13 47106401 to 47106411 10 + TSS region transcription start site region 119627
Tssr119628 13 47106413 to 47106430 17 + TSS region transcription start site region 119628
1700026N04Rik 13 47106419 to 47109519 3100 + bidirectional promoter lncRNA gene RIKEN cDNA 1700026N04 gene
D13Dcr9 13 47111365 to 47111460 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 9
Gm40935 13 47115684 to 47132081 16397 - lncRNA gene predicted gene, 40935
Cpgi5552 13 47122500 to 47123237 737 CpG island CpG island 5552
Tssr119629 13 47122688 to 47122715 27 + TSS region transcription start site region 119629
Tssr119630 13 47122719 to 47122761 42 + TSS region transcription start site region 119630
Rnf144b 13 47122720 to 47247991 125271 + protein coding gene ring finger protein 144B
Lfibq9 13 47129920 to 47675890 545970 QTL liver fibrosis QTL 9
A930002C04Rik 13 47143942 to 47148670 4728 - antisense lncRNA gene RIKEN cDNA A930002C04 gene
Gm48581 13 47152357 to 47155008 2651 - unclassified gene predicted gene, 48581
Cpgi5553 13 47158784 to 47158992 208 CpG island CpG island 5553