Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:46779724-47079800

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kif13a 13 46749087 to 46929867 180780 - protein coding gene kinesin family member 13A
Cpgi5545 13 46786516 to 46786789 273 CpG island CpG island 5545
Cpgi5546 13 46798619 to 46799071 452 CpG island CpG island 5546
D130012G24Rik 13 46804665 to 46808330 3665 unclassified gene RIKEN cDNA D130012G24 gene
Tssr119614 13 46810326 to 46810363 37 + TSS region transcription start site region 119614
D13Mit91 13 46822852 to 46822956 104 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 91
D13Mit92 13 46850245 to 46850414 169 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 92
Gm48250 13 46881027 to 46884898 3871 + antisense lncRNA gene predicted gene, 48250
Gm22960 13 46902589 to 46902692 103 + snRNA gene predicted gene, 22960
Cpgi5547 13 46929003 to 46931055 2052 CpG island CpG island 5547
Tssr122356 13 46929724 to 46929800 76 - TSS region transcription start site region 122356
Tssr122357 13 46929802 to 46929829 27 - TSS region transcription start site region 122357
Tssr119615 13 46929850 to 46929873 23 + TSS region transcription start site region 119615
Tssr122358 13 46930206 to 46930217 11 - TSS region transcription start site region 122358
Tssr119616 13 46944821 to 46944856 35 + TSS region transcription start site region 119616
Gm48325 13 46945190 to 46945693 503 - pseudogene predicted gene, 48325
Tssr119617 13 46966669 to 46966679 10 + TSS region transcription start site region 119617
Tssr4061 13 46968463 to 46968498 35 + TSS region transcription start site region 4061
2010001K21Rik 13 46979908 to 47011195 31287 + unclassified non-coding RNA gene RIKEN cDNA 2010001K21 gene
Gm24769 13 46980720 to 46980848 128 + snoRNA gene predicted gene, 24769
Tssr119618 13 46986437 to 46986464 27 + TSS region transcription start site region 119618
Tssr119619 13 47000105 to 47000131 26 + TSS region transcription start site region 119619
Gm5790 13 47009533 to 47010945 1412 - pseudogene predicted gene 5790
Cpgi5548 13 47010396 to 47011105 709 CpG island CpG island 5548
Tssr122359 13 47010764 to 47010777 13 - TSS region transcription start site region 122359
Tssr122360 13 47011037 to 47011061 24 - TSS region transcription start site region 122360
Nhlrc1 13 47012557 to 47014850 2293 - protein coding gene NHL repeat containing 1
Cpgi5549 13 47013843 to 47015128 1285 CpG island CpG island 5549
Tssr122361 13 47014814 to 47014863 49 - TSS region transcription start site region 122361
Tpmt 13 47021987 to 47043338 21351 - protein coding gene thiopurine methyltransferase
Gm18807 13 47024346 to 47024986 640 + pseudogene predicted gene, 18807
Tssr122362 13 47043116 to 47043186 70 - TSS region transcription start site region 122362
Cpgi5550 13 47043132 to 47044735 1603 CpG island CpG island 5550
Kdm1b 13 47043499 to 47085279 41780 + protein coding gene lysine (K)-specific demethylase 1B
Tssr119620 13 47043527 to 47043591 64 + TSS region transcription start site region 119620
Tssr119621 13 47043881 to 47043905 24 + TSS region transcription start site region 119621
Tssr119622 13 47066392 to 47066401 9 + TSS region transcription start site region 119622
Tssr119623 13 47066431 to 47066442 11 + TSS region transcription start site region 119623
Tssr119624 13 47066448 to 47066463 15 + TSS region transcription start site region 119624