Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:46033266-46803316

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34991 13 46019856 to 46037769 17913 + lncRNA gene predicted gene, 34991
Cpgi5537 13 46043157 to 46043388 231 CpG island CpG island 5537
Tssr119586 13 46060594 to 46060633 39 + TSS region transcription start site region 119586
Gm45949 13 46061296 to 46068758 7462 + lincRNA gene predicted gene, 45949
D13Mit155 13 46081738 to 46081861 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 155
Gm10113 13 46175428 to 46191046 15618 - lincRNA gene predicted gene 10113
Tssr119587 13 46273700 to 46273712 12 + TSS region transcription start site region 119587
Stmnd1 13 46273721 to 46300115 26394 + protein coding gene stathmin domain containing 1
D13Mit308 13 46297110 to 46297207 97 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 308
Tssr119588 13 46340227 to 46340244 17 + TSS region transcription start site region 119588
Cpgi5538 13 46418092 to 46419558 1466 CpG island CpG island 5538
Tssr119589 13 46418212 to 46418238 26 + TSS region transcription start site region 119589
Tssr119590 13 46418266 to 46418316 50 + TSS region transcription start site region 119590
Rbm24 13 46418434 to 46431095 12661 + protein coding gene RNA binding motif protein 24
Tssr119591 13 46418468 to 46418510 42 + TSS region transcription start site region 119591
Tssr119592 13 46419020 to 46419037 17 + TSS region transcription start site region 119592
Tssr119593 13 46420137 to 46420141 4 + TSS region transcription start site region 119593
Tssr119594 13 46420530 to 46420541 11 + TSS region transcription start site region 119594
Tssr119595 13 46429622 to 46429633 11 + TSS region transcription start site region 119595
Tssr119596 13 46430685 to 46430689 4 + TSS region transcription start site region 119596
Gm35110 13 46473549 to 46496461 22912 - bidirectional promoter lncRNA gene predicted gene, 35110
Cpgi5539 13 46501783 to 46502633 850 CpG island CpG island 5539
Tssr119597 13 46501859 to 46501885 26 + TSS region transcription start site region 119597
Tssr119598 13 46501898 to 46501916 18 + TSS region transcription start site region 119598
Cap2 13 46501903 to 46650281 148378 + protein coding gene CAP, adenylate cyclase-associated protein, 2 (yeast)
Tssr119599 13 46502037 to 46502048 11 + TSS region transcription start site region 119599
Tssr119600 13 46502049 to 46502107 58 + TSS region transcription start site region 119600
Tssr119601 13 46502113 to 46502140 27 + TSS region transcription start site region 119601
Tssr119602 13 46502141 to 46502187 46 + TSS region transcription start site region 119602
Tssr122343 13 46502787 to 46502794 7 - TSS region transcription start site region 122343
Tssr119603 13 46502889 to 46502914 25 + TSS region transcription start site region 119603
D13Mit181 13 46508401 to 46508536 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 181
Gm24915 13 46518684 to 46518761 77 + rRNA gene predicted gene, 24915
Gm47523 13 46605327 to 46619780 14453 - antisense lncRNA gene predicted gene, 47523
Tssr119604 13 46609544 to 46609574 30 + TSS region transcription start site region 119604
Cpgi5540 13 46609631 to 46609857 226 CpG island CpG island 5540
Tssr119605 13 46609792 to 46609801 9 + TSS region transcription start site region 119605
Cpgi5541 13 46619729 to 46619932 203 CpG island CpG island 5541
Tssr119606 13 46638226 to 46638230 4 + TSS region transcription start site region 119606
Cpgi5542 13 46669144 to 46670494 1350 CpG island CpG island 5542
Tssr119607 13 46669445 to 46669501 56 + TSS region transcription start site region 119607
Tssr4059 13 46669510 to 46669515 5 + TSS region transcription start site region 4059
Tssr119608 13 46669517 to 46669545 28 + TSS region transcription start site region 119608
Fam8a1 13 46669522 to 46678056 8534 + protein coding gene family with sequence similarity 8, member A1
Tssr119609 13 46669571 to 46669582 11 + TSS region transcription start site region 119609
Nup153 13 46679902 to 46727849 47947 - protein coding gene nucleoporin 153
Tssr122344 13 46696851 to 46696898 47 - TSS region transcription start site region 122344
Gm46412 13 46720557 to 46737102 16545 + lncRNA gene predicted gene, 46412
Tssr119610 13 46725260 to 46725272 12 + TSS region transcription start site region 119610
Tssr119611 13 46725446 to 46725471 25 + TSS region transcription start site region 119611
Tssr122345 13 46726607 to 46726615 8 - TSS region transcription start site region 122345
Cpgi5543 13 46726651 to 46728382 1731 CpG island CpG island 5543
Tssr122346 13 46727054 to 46727057 3 - TSS region transcription start site region 122346
Tssr122347 13 46727563 to 46727588 25 - TSS region transcription start site region 122347
Tssr122348 13 46727589 to 46727616 27 - TSS region transcription start site region 122348
Tssr122349 13 46727632 to 46727649 17 - TSS region transcription start site region 122349
Tssr122350 13 46727654 to 46727668 14 - TSS region transcription start site region 122350
Tssr122351 13 46727670 to 46727683 13 - TSS region transcription start site region 122351
Tssr122352 13 46727795 to 46727862 67 - TSS region transcription start site region 122352
Tssr122353 13 46727912 to 46727926 14 - TSS region transcription start site region 122353
Tssr122354 13 46727932 to 46728005 73 - TSS region transcription start site region 122354
Tssr4060 13 46728007 to 46728045 38 - TSS region transcription start site region 4060
Tssr119612 13 46736054 to 46736057 3 + TSS region transcription start site region 119612
Tssr119613 13 46736103 to 46736138 35 + TSS region transcription start site region 119613
Tssr122355 13 46736886 to 46736925 39 - TSS region transcription start site region 122355
Kif13a 13 46749087 to 46929867 180780 - protein coding gene kinesin family member 13A
Cpgi5544 13 46752374 to 46752686 312 CpG island CpG island 5544
Gm24620 13 46767520 to 46767649 129 - snoRNA gene predicted gene, 24620
Cpgi5545 13 46786516 to 46786789 273 CpG island CpG island 5545
Cpgi5546 13 46798619 to 46799071 452 CpG island CpG island 5546