Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:45949020-46889037

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atxn1 13 45549755 to 45965008 415253 - protein coding gene ataxin 1
Cpgi5536 13 45963244 to 45966303 3059 CpG island CpG island 5536
Tssr122339 13 45963695 to 45963719 24 - TSS region transcription start site region 122339
Tssr122340 13 45964964 to 45965001 37 - TSS region transcription start site region 122340
Tssr119584 13 45965211 to 45965231 20 + TSS region transcription start site region 119584
5033430I15Rik 13 45965253 to 45966508 1255 + lincRNA gene RIKEN cDNA 5033430I15 gene
Tssr119585 13 45965455 to 45965476 21 + TSS region transcription start site region 119585
Tssr122341 13 45966279 to 45966325 46 - TSS region transcription start site region 122341
Tssr122342 13 45971304 to 45971313 9 - TSS region transcription start site region 122342
Gm34991 13 46019856 to 46037769 17913 + lncRNA gene predicted gene, 34991
Cpgi5537 13 46043157 to 46043388 231 CpG island CpG island 5537
Tssr119586 13 46060594 to 46060633 39 + TSS region transcription start site region 119586
Gm45949 13 46061296 to 46068758 7462 + lincRNA gene predicted gene, 45949
D13Mit155 13 46081738 to 46081861 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 155
Gm10113 13 46175428 to 46191046 15618 - lincRNA gene predicted gene 10113
Tssr119587 13 46273700 to 46273712 12 + TSS region transcription start site region 119587
Stmnd1 13 46273721 to 46300115 26394 + protein coding gene stathmin domain containing 1
D13Mit308 13 46297110 to 46297207 97 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 308
Tssr119588 13 46340227 to 46340244 17 + TSS region transcription start site region 119588
Cpgi5538 13 46418092 to 46419558 1466 CpG island CpG island 5538
Tssr119589 13 46418212 to 46418238 26 + TSS region transcription start site region 119589
Tssr119590 13 46418266 to 46418316 50 + TSS region transcription start site region 119590
Rbm24 13 46418434 to 46431095 12661 + protein coding gene RNA binding motif protein 24
Tssr119591 13 46418468 to 46418510 42 + TSS region transcription start site region 119591
Tssr119592 13 46419020 to 46419037 17 + TSS region transcription start site region 119592
Tssr119593 13 46420137 to 46420141 4 + TSS region transcription start site region 119593
Tssr119594 13 46420530 to 46420541 11 + TSS region transcription start site region 119594
Tssr119595 13 46429622 to 46429633 11 + TSS region transcription start site region 119595
Tssr119596 13 46430685 to 46430689 4 + TSS region transcription start site region 119596
Gm35110 13 46473549 to 46496461 22912 - bidirectional promoter lncRNA gene predicted gene, 35110
Cpgi5539 13 46501783 to 46502633 850 CpG island CpG island 5539
Tssr119597 13 46501859 to 46501885 26 + TSS region transcription start site region 119597
Tssr119598 13 46501898 to 46501916 18 + TSS region transcription start site region 119598
Cap2 13 46501903 to 46650281 148378 + protein coding gene CAP, adenylate cyclase-associated protein, 2 (yeast)
Tssr119599 13 46502037 to 46502048 11 + TSS region transcription start site region 119599
Tssr119600 13 46502049 to 46502107 58 + TSS region transcription start site region 119600
Tssr119601 13 46502113 to 46502140 27 + TSS region transcription start site region 119601
Tssr119602 13 46502141 to 46502187 46 + TSS region transcription start site region 119602
Tssr122343 13 46502787 to 46502794 7 - TSS region transcription start site region 122343
Tssr119603 13 46502889 to 46502914 25 + TSS region transcription start site region 119603
D13Mit181 13 46508401 to 46508536 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 181
Gm24915 13 46518684 to 46518761 77 + rRNA gene predicted gene, 24915
Gm47523 13 46605327 to 46619780 14453 - antisense lncRNA gene predicted gene, 47523
Tssr119604 13 46609544 to 46609574 30 + TSS region transcription start site region 119604
Cpgi5540 13 46609631 to 46609857 226 CpG island CpG island 5540
Tssr119605 13 46609792 to 46609801 9 + TSS region transcription start site region 119605
Cpgi5541 13 46619729 to 46619932 203 CpG island CpG island 5541
Tssr119606 13 46638226 to 46638230 4 + TSS region transcription start site region 119606
Cpgi5542 13 46669144 to 46670494 1350 CpG island CpG island 5542
Tssr119607 13 46669445 to 46669501 56 + TSS region transcription start site region 119607
Tssr4059 13 46669510 to 46669515 5 + TSS region transcription start site region 4059
Tssr119608 13 46669517 to 46669545 28 + TSS region transcription start site region 119608
Fam8a1 13 46669522 to 46678056 8534 + protein coding gene family with sequence similarity 8, member A1
Tssr119609 13 46669571 to 46669582 11 + TSS region transcription start site region 119609
Nup153 13 46679902 to 46727849 47947 - protein coding gene nucleoporin 153
Tssr122344 13 46696851 to 46696898 47 - TSS region transcription start site region 122344
Gm46412 13 46720557 to 46737102 16545 + lncRNA gene predicted gene, 46412
Tssr119610 13 46725260 to 46725272 12 + TSS region transcription start site region 119610
Tssr119611 13 46725446 to 46725471 25 + TSS region transcription start site region 119611
Tssr122345 13 46726607 to 46726615 8 - TSS region transcription start site region 122345
Cpgi5543 13 46726651 to 46728382 1731 CpG island CpG island 5543
Tssr122346 13 46727054 to 46727057 3 - TSS region transcription start site region 122346
Tssr122347 13 46727563 to 46727588 25 - TSS region transcription start site region 122347
Tssr122348 13 46727589 to 46727616 27 - TSS region transcription start site region 122348
Tssr122349 13 46727632 to 46727649 17 - TSS region transcription start site region 122349
Tssr122350 13 46727654 to 46727668 14 - TSS region transcription start site region 122350
Tssr122351 13 46727670 to 46727683 13 - TSS region transcription start site region 122351
Tssr122352 13 46727795 to 46727862 67 - TSS region transcription start site region 122352
Tssr122353 13 46727912 to 46727926 14 - TSS region transcription start site region 122353
Tssr122354 13 46727932 to 46728005 73 - TSS region transcription start site region 122354
Tssr4060 13 46728007 to 46728045 38 - TSS region transcription start site region 4060
Tssr119612 13 46736054 to 46736057 3 + TSS region transcription start site region 119612
Tssr119613 13 46736103 to 46736138 35 + TSS region transcription start site region 119613
Tssr122355 13 46736886 to 46736925 39 - TSS region transcription start site region 122355
Kif13a 13 46749087 to 46929867 180780 - protein coding gene kinesin family member 13A
Cpgi5544 13 46752374 to 46752686 312 CpG island CpG island 5544
Gm24620 13 46767520 to 46767649 129 - snoRNA gene predicted gene, 24620
Cpgi5545 13 46786516 to 46786789 273 CpG island CpG island 5545
Cpgi5546 13 46798619 to 46799071 452 CpG island CpG island 5546
D130012G24Rik 13 46804665 to 46808330 3665 unclassified gene RIKEN cDNA D130012G24 gene
Tssr119614 13 46810326 to 46810363 37 + TSS region transcription start site region 119614
D13Mit91 13 46822852 to 46822956 104 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 91
D13Mit92 13 46850245 to 46850414 169 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 92
Gm48250 13 46881027 to 46884898 3871 + antisense lncRNA gene predicted gene, 48250