Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:45918700-46628712

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atxn1 13 45549755 to 45965008 415253 - protein coding gene ataxin 1
9930104M19Rik 13 45905819 to 45941037 35218 unclassified gene RIKEN cDNA 9930104M19 gene
Tssr122332 13 45922547 to 45922553 6 - TSS region transcription start site region 122332
Tssr122333 13 45923420 to 45923440 20 - TSS region transcription start site region 122333
Tssr122334 13 45923653 to 45923676 23 - TSS region transcription start site region 122334
Tssr122335 13 45925404 to 45925418 14 - TSS region transcription start site region 122335
Tssr122336 13 45933261 to 45933265 4 - TSS region transcription start site region 122336
Tssr119583 13 45936035 to 45936053 18 + TSS region transcription start site region 119583
4930453C13Rik 13 45936040 to 45936904 864 + antisense lncRNA gene RIKEN cDNA 4930453C13 gene
Tssr122337 13 45940695 to 45940699 4 - TSS region transcription start site region 122337
Tssr122338 13 45946237 to 45946271 34 - TSS region transcription start site region 122338
Cpgi5536 13 45963244 to 45966303 3059 CpG island CpG island 5536
Tssr122339 13 45963695 to 45963719 24 - TSS region transcription start site region 122339
Tssr122340 13 45964964 to 45965001 37 - TSS region transcription start site region 122340
Tssr119584 13 45965211 to 45965231 20 + TSS region transcription start site region 119584
5033430I15Rik 13 45965253 to 45966508 1255 + lincRNA gene RIKEN cDNA 5033430I15 gene
Tssr119585 13 45965455 to 45965476 21 + TSS region transcription start site region 119585
Tssr122341 13 45966279 to 45966325 46 - TSS region transcription start site region 122341
Tssr122342 13 45971304 to 45971313 9 - TSS region transcription start site region 122342
Gm34991 13 46019856 to 46037769 17913 + lncRNA gene predicted gene, 34991
Cpgi5537 13 46043157 to 46043388 231 CpG island CpG island 5537
Tssr119586 13 46060594 to 46060633 39 + TSS region transcription start site region 119586
Gm45949 13 46061296 to 46068758 7462 + lincRNA gene predicted gene, 45949
D13Mit155 13 46081738 to 46081861 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 155
Gm10113 13 46175428 to 46191046 15618 - lincRNA gene predicted gene 10113
Tssr119587 13 46273700 to 46273712 12 + TSS region transcription start site region 119587
Stmnd1 13 46273721 to 46300115 26394 + protein coding gene stathmin domain containing 1
D13Mit308 13 46297110 to 46297207 97 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 308
Tssr119588 13 46340227 to 46340244 17 + TSS region transcription start site region 119588
Cpgi5538 13 46418092 to 46419558 1466 CpG island CpG island 5538
Tssr119589 13 46418212 to 46418238 26 + TSS region transcription start site region 119589
Tssr119590 13 46418266 to 46418316 50 + TSS region transcription start site region 119590
Rbm24 13 46418434 to 46431095 12661 + protein coding gene RNA binding motif protein 24
Tssr119591 13 46418468 to 46418510 42 + TSS region transcription start site region 119591
Tssr119592 13 46419020 to 46419037 17 + TSS region transcription start site region 119592
Tssr119593 13 46420137 to 46420141 4 + TSS region transcription start site region 119593
Tssr119594 13 46420530 to 46420541 11 + TSS region transcription start site region 119594
Tssr119595 13 46429622 to 46429633 11 + TSS region transcription start site region 119595
Tssr119596 13 46430685 to 46430689 4 + TSS region transcription start site region 119596
Gm35110 13 46473549 to 46496461 22912 - bidirectional promoter lncRNA gene predicted gene, 35110
Cpgi5539 13 46501783 to 46502633 850 CpG island CpG island 5539
Tssr119597 13 46501859 to 46501885 26 + TSS region transcription start site region 119597
Tssr119598 13 46501898 to 46501916 18 + TSS region transcription start site region 119598
Cap2 13 46501903 to 46650281 148378 + protein coding gene CAP, adenylate cyclase-associated protein, 2 (yeast)
Tssr119599 13 46502037 to 46502048 11 + TSS region transcription start site region 119599
Tssr119600 13 46502049 to 46502107 58 + TSS region transcription start site region 119600
Tssr119601 13 46502113 to 46502140 27 + TSS region transcription start site region 119601
Tssr119602 13 46502141 to 46502187 46 + TSS region transcription start site region 119602
Tssr122343 13 46502787 to 46502794 7 - TSS region transcription start site region 122343
Tssr119603 13 46502889 to 46502914 25 + TSS region transcription start site region 119603
D13Mit181 13 46508401 to 46508536 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 181
Gm24915 13 46518684 to 46518761 77 + rRNA gene predicted gene, 24915
Gm47523 13 46605327 to 46619780 14453 - antisense lncRNA gene predicted gene, 47523
Tssr119604 13 46609544 to 46609574 30 + TSS region transcription start site region 119604
Cpgi5540 13 46609631 to 46609857 226 CpG island CpG island 5540
Tssr119605 13 46609792 to 46609801 9 + TSS region transcription start site region 119605
Cpgi5541 13 46619729 to 46619932 203 CpG island CpG island 5541