Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:45876279-46056325

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24 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atxn1 13 45549755 to 45965008 415253 - protein coding gene ataxin 1
D13Mit34 13 45885185 to 45885285 100 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 34
Tssr122331 13 45885784 to 45885788 4 - TSS region transcription start site region 122331
9930104M19Rik 13 45905819 to 45941037 35218 unclassified gene RIKEN cDNA 9930104M19 gene
Cpgi5535 13 45917303 to 45917577 274 CpG island CpG island 5535
Tssr122332 13 45922547 to 45922553 6 - TSS region transcription start site region 122332
Tssr122333 13 45923420 to 45923440 20 - TSS region transcription start site region 122333
Tssr122334 13 45923653 to 45923676 23 - TSS region transcription start site region 122334
Tssr122335 13 45925404 to 45925418 14 - TSS region transcription start site region 122335
Tssr122336 13 45933261 to 45933265 4 - TSS region transcription start site region 122336
Tssr119583 13 45936035 to 45936053 18 + TSS region transcription start site region 119583
4930453C13Rik 13 45936040 to 45936904 864 + antisense lncRNA gene RIKEN cDNA 4930453C13 gene
Tssr122337 13 45940695 to 45940699 4 - TSS region transcription start site region 122337
Tssr122338 13 45946237 to 45946271 34 - TSS region transcription start site region 122338
Cpgi5536 13 45963244 to 45966303 3059 CpG island CpG island 5536
Tssr122339 13 45963695 to 45963719 24 - TSS region transcription start site region 122339
Tssr122340 13 45964964 to 45965001 37 - TSS region transcription start site region 122340
Tssr119584 13 45965211 to 45965231 20 + TSS region transcription start site region 119584
5033430I15Rik 13 45965253 to 45966508 1255 + lincRNA gene RIKEN cDNA 5033430I15 gene
Tssr119585 13 45965455 to 45965476 21 + TSS region transcription start site region 119585
Tssr122341 13 45966279 to 45966325 46 - TSS region transcription start site region 122341
Tssr122342 13 45971304 to 45971313 9 - TSS region transcription start site region 122342
Gm34991 13 46019856 to 46037769 17913 + lncRNA gene predicted gene, 34991
Cpgi5537 13 46043157 to 46043388 231 CpG island CpG island 5537