Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:44881534-45492536

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jarid2 13 44729535 to 44921643 192108 + protein coding gene jumonji, AT rich interactive domain 2
Tssr119569 13 44896423 to 44896440 17 + TSS region transcription start site region 119569
Dtnbp1 13 44922077 to 45002096 80019 - protein coding gene dystrobrevin binding protein 1
Tssr122290 13 44947131 to 44947157 26 - TSS region transcription start site region 122290
Tssr122291 13 44947164 to 44947188 24 - TSS region transcription start site region 122291
Tssr119570 13 44961547 to 44961550 3 + TSS region transcription start site region 119570
Tssr122292 13 44979213 to 44979219 6 - TSS region transcription start site region 122292
Tssr122293 13 44982793 to 44982802 9 - TSS region transcription start site region 122293
Tssr122294 13 44982813 to 44982842 29 - TSS region transcription start site region 122294
Tssr122295 13 44982847 to 44982858 11 - TSS region transcription start site region 122295
Tssr122296 13 44982974 to 44982979 5 - TSS region transcription start site region 122296
Tssr122297 13 44982989 to 44983004 15 - TSS region transcription start site region 122297
Cpgi5528 13 45001386 to 45002561 1175 CpG island CpG island 5528
Tssr122298 13 45001828 to 45001846 18 - TSS region transcription start site region 122298
Tssr122299 13 45002045 to 45002117 72 - TSS region transcription start site region 122299
Tssr122300 13 45002140 to 45002151 11 - TSS region transcription start site region 122300
Gm23104 13 45026252 to 45026355 103 - snRNA gene predicted gene, 23104
Bxs7 13 45056966 to 83596627 38539661 QTL BXSB/MpJ autoimmune nephritis 7
Bxs6 13 45056966 to 83596627 38539661 QTL BXSB/MpJ autoimmune nephritis 6
D13Mit64 13 45056966 to 45057068 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 64
Pcd4ts2 13 45056966 to 45057068 102 QTL p-glycoprotein positive CD4 T cell subset 2
Cpgi5529 13 45059283 to 45059443 160 CpG island CpG island 5529
D13Mit245 13 45063903 to 45064039 136 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 245
Vtbt15 13 45063903 to 45064039 136 QTL vertebral trabecular bone trait 15
Heal21 13 45063903 to 45064039 136 QTL wound healing/regeneration 21
Gm34409 13 45075493 to 45078269 2776 + lncRNA gene predicted gene, 34409
Hsp25-ps1 13 45078498 to 45079127 629 - pseudogene heat shock protein 25, pseudogene 1
Cpgi5530 13 45078559 to 45078773 214 CpG island CpG island 5530
Gm9817 13 45078692 to 45081222 2530 + protein coding gene predicted gene 9817
Tssr122301 13 45079183 to 45079191 8 - TSS region transcription start site region 122301
Gm40932 13 45106951 to 45117884 10933 + lincRNA gene predicted gene, 40932
D13Mit277 13 45140870 to 45140994 124 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 277
Gm8513 13 45186534 to 45187536 1002 - pseudogene predicted gene 8513
D13Mit267 13 45224654 to 45224747 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 267
Gm47448 13 45235635 to 45335588 99953 + lincRNA gene predicted gene, 47448
Gm34466 13 45246632 to 45267711 21079 - lincRNA gene predicted gene, 34466
Gm23755 13 45294654 to 45294996 342 - unclassified non-coding RNA gene predicted gene, 23755
D13Mit180 13 45331260 to 45331367 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 180
Gm40933 13 45359100 to 45371211 12111 + lncRNA gene predicted gene, 40933
Cpgi5531 13 45389392 to 45390570 1178 CpG island CpG island 5531
Tssr119571 13 45389734 to 45389750 16 + TSS region transcription start site region 119571
Mylip 13 45389742 to 45411940 22198 + protein coding gene myosin regulatory light chain interacting protein
Tssr119572 13 45391764 to 45391779 15 + TSS region transcription start site region 119572
Tssr119573 13 45391780 to 45391794 14 + TSS region transcription start site region 119573
Tssr119574 13 45403487 to 45403490 3 + TSS region transcription start site region 119574
Tssr119575 13 45410765 to 45410768 3 + TSS region transcription start site region 119575
Gm47455 13 45431002 to 45431331 329 + pseudogene predicted gene, 47455
Gm23387 13 45486224 to 45486330 106 - snRNA gene predicted gene, 23387