Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:4450187-5860192

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akr1c6 13 4434311 to 4457530 23219 + protein coding gene aldo-keto reductase family 1, member C6
Gm48010 13 4465680 to 4466566 886 - lincRNA gene predicted gene, 48010
Akr1c20 13 4486849 to 4523345 36496 - protein coding gene aldo-keto reductase family 1, member C20
Tssr121304 13 4523322 to 4523355 33 - TSS region transcription start site region 121304
Gm40657 13 4555411 to 4565781 10370 - lncRNA gene predicted gene, 40657
Akr1c21 13 4574075 to 4586541 12466 + protein coding gene aldo-keto reductase family 1, member C21
Tssr118227 13 4574075 to 4574088 13 + TSS region transcription start site region 118227
Akr1e1 13 4592490 to 4609164 16674 - protein coding gene aldo-keto reductase family 1, member E1
Tssr121305 13 4609122 to 4609189 67 - TSS region transcription start site region 121305
Tssr118228 13 4614126 to 4614127 1 + TSS region transcription start site region 118228
Rpl29-ps2 13 4614127 to 4614793 666 + pseudogene ribosomal protein L29, pseudogene 2
Tssr118229 13 4725579 to 4725594 15 + TSS region transcription start site region 118229
Gm40658 13 4725779 to 4745537 19758 + lincRNA gene predicted gene, 40658
Tssr121306 13 4756400 to 4756425 25 - TSS region transcription start site region 121306
Gm5444 13 4771651 to 4836485 64834 + lincRNA gene predicted gene 5444
Gm47450 13 4915714 to 4943052 27338 - lincRNA gene predicted gene, 47450
D13Mit158 13 4934018 to 4934159 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 158
Tssr118230 13 5155187 to 5155192 5 + TSS region transcription start site region 118230
Gm24790 13 5189803 to 5189934 131 - snoRNA gene predicted gene, 24790
Gm47451 13 5215791 to 5216178 387 - pseudogene predicted gene, 47451
Gm40659 13 5258802 to 5266034 7232 + lncRNA gene predicted gene, 40659
Gm40660 13 5455229 to 5470234 15005 + lincRNA gene predicted gene, 40660
C86273 13 5539284 to 5551031 11747 unclassified gene expressed sequence C86273
Gm40661 13 5553389 to 5558600 5211 + lncRNA gene predicted gene, 40661
Tssr121307 13 5604177 to 5604189 12 - TSS region transcription start site region 121307
Gm35330 13 5690821 to 5724611 33790 - lincRNA gene predicted gene, 35330
Tssr121308 13 5724439 to 5724458 19 - TSS region transcription start site region 121308
Tssr118231 13 5786067 to 5786068 1 + TSS region transcription start site region 118231
Tssr118232 13 5789609 to 5789612 3 + TSS region transcription start site region 118232
Gm35413 13 5802782 to 5803161 379 - lncRNA gene predicted gene, 35413
Cpgi5252 13 5802900 to 5803061 161 CpG island CpG island 5252
Tssr118233 13 5803829 to 5803847 18 + TSS region transcription start site region 118233
Tssr118234 13 5804544 to 5804550 6 + TSS region transcription start site region 118234
Tssr121309 13 5804636 to 5804648 12 - TSS region transcription start site region 121309
Gm26043 13 5821768 to 5821858 90 - miRNA gene predicted gene, 26043
Tssr121310 13 5822716 to 5822721 5 - TSS region transcription start site region 121310
Gm35464 13 5830121 to 5834477 4356 + lncRNA gene predicted gene, 35464
Tssr118235 13 5841719 to 5841720 1 + TSS region transcription start site region 118235
Tssr118236 13 5845316 to 5845334 18 + TSS region transcription start site region 118236
Tssr121311 13 5845725 to 5845738 13 - TSS region transcription start site region 121311
Tssr121312 13 5845770 to 5845782 12 - TSS region transcription start site region 121312
Tssr121313 13 5845787 to 5845818 31 - TSS region transcription start site region 121313
1700016G22Rik 13 5855509 to 5858092 2583 - lincRNA gene RIKEN cDNA 1700016G22 gene
Tssr121314 13 5857518 to 5857561 43 - TSS region transcription start site region 121314