Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:44052496-44882499

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igmsc1 13 16993960 to 44765084 27771124 QTL immunoglobulin M secreting cells 1
Gm33630 13 44092028 to 44099960 7932 - lincRNA gene predicted gene, 33630
Gm5083 13 44121167 to 44125179 4012 + lincRNA gene predicted gene 5083
Tssr119526 13 44121294 to 44121322 28 + TSS region transcription start site region 119526
Cpgi5523 13 44139100 to 44139328 228 CpG island CpG island 5523
Gm33684 13 44150595 to 44151953 1358 + lincRNA gene predicted gene, 33684
A330076C08Rik 13 44193589 to 44216487 22898 - lincRNA gene RIKEN cDNA A330076C08 gene
Tssr119527 13 44197057 to 44197062 5 + TSS region transcription start site region 119527
Tssr119528 13 44197073 to 44197081 8 + TSS region transcription start site region 119528
Tssr122279 13 44197458 to 44197469 11 - TSS region transcription start site region 122279
D13Mit165 13 44215633 to 44215754 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 165
Tssr119529 13 44216191 to 44216226 35 + TSS region transcription start site region 119529
Gm47781 13 44232398 to 44239606 7208 + lincRNA gene predicted gene, 47781
Gm29676 13 44250092 to 44260123 10031 - lincRNA gene predicted gene, 29676
D13Mit49 13 44322063 to 44322211 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 49
Gm33958 13 44363836 to 44391117 27281 - lincRNA gene predicted gene, 33958
Gm27007 13 44400436 to 44455303 54867 - lincRNA gene predicted gene, 27007
Gm27036 13 44438834 to 44439813 979 - pseudogene predicted gene, 27036
Tssr119530 13 44439722 to 44439732 10 + TSS region transcription start site region 119530
1700029N11Rik 13 44439727 to 44457567 17840 + lincRNA gene RIKEN cDNA 1700029N11 gene
Tssr122280 13 44455305 to 44455324 19 - TSS region transcription start site region 122280
Gm34020 13 44467020 to 44470727 3707 - lncRNA gene predicted gene, 34020
Tssr119531 13 44467496 to 44467499 3 + TSS region transcription start site region 119531
Gm34084 13 44472417 to 44480319 7902 - lincRNA gene predicted gene, 34084
Tssr122281 13 44477051 to 44477060 9 - TSS region transcription start site region 122281
Tssr122282 13 44480306 to 44480309 3 - TSS region transcription start site region 122282
Tssr122283 13 44480319 to 44480333 14 - TSS region transcription start site region 122283
D13Sfk1 13 44483360 to 44483506 146 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 1
Gm40930 13 44504628 to 44508705 4077 + lncRNA gene predicted gene, 40930
Gm47792 13 44509558 to 44511037 1479 + lincRNA gene predicted gene, 47792
Tssr4057 13 44528869 to 44528871 2 + TSS region transcription start site region 4057
Cpgi5524 13 44535481 to 44535711 230 CpG island CpG island 5524
Gm34276 13 44537309 to 44568668 31359 - lincRNA gene predicted gene, 34276
Gm40931 13 44573582 to 44637009 63427 - lncRNA gene predicted gene, 40931
Tssr119532 13 44592698 to 44592709 11 + TSS region transcription start site region 119532
Gm47805 13 44622182 to 44625217 3035 + lincRNA gene predicted gene, 47805
D13Mit244 13 44646972 to 44647145 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 244
Tssr119533 13 44678554 to 44678562 8 + TSS region transcription start site region 119533
Tssr122284 13 44679279 to 44679284 5 - TSS region transcription start site region 122284
Tssr122285 13 44704504 to 44704514 10 - TSS region transcription start site region 122285
Tssr119534 13 44705902 to 44705918 16 + TSS region transcription start site region 119534
Cpgi5525 13 44729409 to 44731426 2017 CpG island CpG island 5525
Tssr119535 13 44729522 to 44729550 28 + TSS region transcription start site region 119535
Jarid2 13 44729535 to 44921643 192108 + protein coding gene jumonji, AT rich interactive domain 2
Tssr119536 13 44729600 to 44729614 14 + TSS region transcription start site region 119536
Tssr119537 13 44729639 to 44729697 58 + TSS region transcription start site region 119537
Tssr119538 13 44729794 to 44729807 13 + TSS region transcription start site region 119538
Tssr119539 13 44730594 to 44730598 4 + TSS region transcription start site region 119539
Tssr119540 13 44730726 to 44730816 90 + TSS region transcription start site region 119540
Tssr119541 13 44730881 to 44730907 26 + TSS region transcription start site region 119541
Tssr119542 13 44731019 to 44731036 17 + TSS region transcription start site region 119542
Tssr119543 13 44731265 to 44731276 11 + TSS region transcription start site region 119543
Tssr119544 13 44731281 to 44731292 11 + TSS region transcription start site region 119544
Tssr119545 13 44731325 to 44731341 16 + TSS region transcription start site region 119545
Tssr119546 13 44731353 to 44731373 20 + TSS region transcription start site region 119546
Tssr119547 13 44731568 to 44731583 15 + TSS region transcription start site region 119547
Tssr119548 13 44731724 to 44731738 14 + TSS region transcription start site region 119548
Tssr119549 13 44731842 to 44731861 19 + TSS region transcription start site region 119549
Cpgi5526 13 44733210 to 44734230 1020 CpG island CpG island 5526
Tssr119550 13 44734034 to 44734069 35 + TSS region transcription start site region 119550
Tssr119551 13 44736672 to 44736675 3 + TSS region transcription start site region 119551
Tssr119552 13 44741482 to 44741487 5 + TSS region transcription start site region 119552
Tssr119553 13 44742073 to 44742097 24 + TSS region transcription start site region 119553
Tssr119554 13 44749068 to 44749073 5 + TSS region transcription start site region 119554
D13Ertd787e 13 44757063 to 44757263 200 DNA segment DNA segment, Chr 13, ERATO Doi 787, expressed
Tssr119555 13 44757928 to 44757932 4 + TSS region transcription start site region 119555
Pgia40 13 44764993 to 44765084 91 QTL proteoglycan induced arthritis 40
D13Mit179 13 44764993 to 44765084 91 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 179
Tssr119556 13 44766620 to 44766623 3 + TSS region transcription start site region 119556
Tssr119557 13 44782400 to 44782430 30 + TSS region transcription start site region 119557
Tssr119558 13 44800783 to 44800788 5 + TSS region transcription start site region 119558
D13Ertd42e 13 44805995 to 44806231 236 DNA segment DNA segment, Chr 13, ERATO Doi 42, expressed
Tssr119559 13 44807756 to 44807768 12 + TSS region transcription start site region 119559
Tssr119560 13 44808626 to 44808633 7 + TSS region transcription start site region 119560
A930104B17Rik 13 44812344 to 44813922 1578 unclassified gene RIKEN cDNA A930104B17 gene
Tssr119561 13 44819954 to 44819971 17 + TSS region transcription start site region 119561
Tssr119562 13 44837081 to 44837091 10 + TSS region transcription start site region 119562
Gm22213 13 44838165 to 44838283 118 - snoRNA gene predicted gene, 22213
Tssr119563 13 44840686 to 44840697 11 + TSS region transcription start site region 119563
Tssr119564 13 44840708 to 44840727 19 + TSS region transcription start site region 119564
Tssr119565 13 44840737 to 44840752 15 + TSS region transcription start site region 119565
Tssr119566 13 44840757 to 44840795 38 + TSS region transcription start site region 119566
Tssr119567 13 44850946 to 44850952 6 + TSS region transcription start site region 119567
Cpgi5527 13 44869576 to 44870109 533 CpG island CpG island 5527
Tssr122286 13 44869608 to 44869623 15 - TSS region transcription start site region 122286
Tssr122287 13 44869660 to 44869671 11 - TSS region transcription start site region 122287
Tssr122288 13 44869687 to 44869714 27 - TSS region transcription start site region 122288
Tssr122289 13 44869718 to 44869729 11 - TSS region transcription start site region 122289
Tssr4058 13 44870071 to 44870101 30 - TSS region transcription start site region 4058
Tssr119568 13 44874354 to 44874377 23 + TSS region transcription start site region 119568