Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:43557309-45548668

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igmsc1 13 16993960 to 44765084 27771124 QTL immunoglobulin M secreting cells 1
Mcur1 13 43538393 to 43560191 21798 - protein coding gene mitochondrial calcium uniporter regulator 1
Cpgi5517 13 43559475 to 43560545 1070 CpG island CpG island 5517
Tssr122270 13 43559812 to 43559851 39 - TSS region transcription start site region 122270
Tssr122271 13 43559852 to 43559870 18 - TSS region transcription start site region 122271
Tssr122272 13 43560114 to 43560171 57 - TSS region transcription start site region 122272
Tssr122273 13 43560174 to 43560231 57 - TSS region transcription start site region 122273
Cpgi5518 13 43579740 to 43580136 396 CpG island CpG island 5518
Cpgi5519 13 43592551 to 43592789 238 CpG island CpG island 5519
Tssr119507 13 43603819 to 43603847 28 + TSS region transcription start site region 119507
Tssr119508 13 43603859 to 43603870 11 + TSS region transcription start site region 119508
Cpgi5520 13 43615618 to 43616335 717 CpG island CpG island 5520
Rnf182 13 43615710 to 43670945 55235 + protein coding gene ring finger protein 182
Tssr119509 13 43615768 to 43615788 20 + TSS region transcription start site region 119509
Tssr119510 13 43615950 to 43615991 41 + TSS region transcription start site region 119510
Tssr119511 13 43615998 to 43616016 18 + TSS region transcription start site region 119511
Tssr119512 13 43616027 to 43616044 17 + TSS region transcription start site region 119512
Tssr122274 13 43616067 to 43616086 19 - TSS region transcription start site region 122274
Tssr119513 13 43653570 to 43653571 1 + TSS region transcription start site region 119513
Gm47728 13 43683120 to 43701064 17944 + lincRNA gene predicted gene, 47728
C030005H24Rik 13 43704434 to 43705019 585 unclassified non-coding RNA gene RIKEN cDNA C030005H24 gene
Gm20751 13 43716791 to 43719038 2247 + lincRNA gene predicted gene, 20751
Tssr122275 13 43765247 to 43765263 16 - TSS region transcription start site region 122275
Tssr119514 13 43765505 to 43765530 25 + TSS region transcription start site region 119514
Tssr119515 13 43765535 to 43765548 13 + TSS region transcription start site region 119515
D13Mit19 13 43767657 to 43767806 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 19
Cpgi5521 13 43784751 to 43785758 1007 CpG island CpG island 5521
Cd83 13 43785112 to 43803133 18021 + protein coding gene CD83 antigen
Tssr119516 13 43785140 to 43785160 20 + TSS region transcription start site region 119516
Tssr119517 13 43785168 to 43785203 35 + TSS region transcription start site region 119517
Tssr122276 13 43789076 to 43789093 17 - TSS region transcription start site region 122276
Tssr119518 13 43791029 to 43791053 24 + TSS region transcription start site region 119518
Tssr119519 13 43797599 to 43797618 19 + TSS region transcription start site region 119519
Tssr119520 13 43797884 to 43797897 13 + TSS region transcription start site region 119520
Tssr119521 13 43804927 to 43804935 8 + TSS region transcription start site region 119521
Gm33115 13 43842453 to 43846157 3704 + lincRNA gene predicted gene, 33115
Cpgi5522 13 43864338 to 43865367 1029 CpG island CpG island 5522
Gm33195 13 43864669 to 43868589 3920 + lincRNA gene predicted gene, 33195
Gm23117 13 43872802 to 43872909 107 + snRNA gene predicted gene, 23117
Tssr122277 13 43923877 to 43923886 9 - TSS region transcription start site region 122277
Tssr119522 13 43948837 to 43948840 3 + TSS region transcription start site region 119522
Gm2233 13 43948879 to 43952699 3820 + lincRNA gene predicted gene 2233
Tssr119523 13 43962204 to 43962226 22 + TSS region transcription start site region 119523
Tssr119524 13 43962245 to 43962281 36 + TSS region transcription start site region 119524
Tssr119525 13 43974921 to 43974928 7 + TSS region transcription start site region 119525
D13Mit243 13 43985062 to 43985164 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 243
A430062P19Rik 13 43990996 to 43992794 1798 unclassified gene RIKEN cDNA A430062P19 gene
D13Mit164 13 43995190 to 43995307 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 164
Gm33489 13 44010592 to 44018522 7930 - lincRNA gene predicted gene, 33489
Tssr122278 13 44018572 to 44018604 32 - TSS region transcription start site region 122278
Gm33630 13 44092028 to 44099960 7932 - lincRNA gene predicted gene, 33630
Gm5083 13 44121167 to 44125179 4012 + lincRNA gene predicted gene 5083
Tssr119526 13 44121294 to 44121322 28 + TSS region transcription start site region 119526
Cpgi5523 13 44139100 to 44139328 228 CpG island CpG island 5523
Gm33684 13 44150595 to 44151953 1358 + lincRNA gene predicted gene, 33684
A330076C08Rik 13 44193589 to 44216487 22898 - lincRNA gene RIKEN cDNA A330076C08 gene
Tssr119527 13 44197057 to 44197062 5 + TSS region transcription start site region 119527
Tssr119528 13 44197073 to 44197081 8 + TSS region transcription start site region 119528
Tssr122279 13 44197458 to 44197469 11 - TSS region transcription start site region 122279
D13Mit165 13 44215633 to 44215754 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 165
Tssr119529 13 44216191 to 44216226 35 + TSS region transcription start site region 119529
Gm47781 13 44232398 to 44239606 7208 + lincRNA gene predicted gene, 47781
Gm29676 13 44250092 to 44260123 10031 - lincRNA gene predicted gene, 29676
D13Mit49 13 44322063 to 44322211 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 49
Gm33958 13 44363836 to 44391117 27281 - lincRNA gene predicted gene, 33958
Gm27007 13 44400436 to 44455303 54867 - lincRNA gene predicted gene, 27007
Gm27036 13 44438834 to 44439813 979 - pseudogene predicted gene, 27036
Tssr119530 13 44439722 to 44439732 10 + TSS region transcription start site region 119530
1700029N11Rik 13 44439727 to 44457567 17840 + lincRNA gene RIKEN cDNA 1700029N11 gene
Tssr122280 13 44455305 to 44455324 19 - TSS region transcription start site region 122280
Gm34020 13 44467020 to 44470727 3707 - lncRNA gene predicted gene, 34020
Tssr119531 13 44467496 to 44467499 3 + TSS region transcription start site region 119531
Gm34084 13 44472417 to 44480319 7902 - lincRNA gene predicted gene, 34084
Tssr122281 13 44477051 to 44477060 9 - TSS region transcription start site region 122281
Tssr122282 13 44480306 to 44480309 3 - TSS region transcription start site region 122282
Tssr122283 13 44480319 to 44480333 14 - TSS region transcription start site region 122283
D13Sfk1 13 44483360 to 44483506 146 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 1
Gm40930 13 44504628 to 44508705 4077 + lncRNA gene predicted gene, 40930
Gm47792 13 44509558 to 44511037 1479 + lincRNA gene predicted gene, 47792
Tssr4057 13 44528869 to 44528871 2 + TSS region transcription start site region 4057
Cpgi5524 13 44535481 to 44535711 230 CpG island CpG island 5524
Gm34276 13 44537309 to 44568668 31359 - lincRNA gene predicted gene, 34276
Gm40931 13 44573582 to 44637009 63427 - lncRNA gene predicted gene, 40931
Tssr119532 13 44592698 to 44592709 11 + TSS region transcription start site region 119532
Gm47805 13 44622182 to 44625217 3035 + lincRNA gene predicted gene, 47805
D13Mit244 13 44646972 to 44647145 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 244
Tssr119533 13 44678554 to 44678562 8 + TSS region transcription start site region 119533
Tssr122284 13 44679279 to 44679284 5 - TSS region transcription start site region 122284
Tssr122285 13 44704504 to 44704514 10 - TSS region transcription start site region 122285
Tssr119534 13 44705902 to 44705918 16 + TSS region transcription start site region 119534
Cpgi5525 13 44729409 to 44731426 2017 CpG island CpG island 5525
Tssr119535 13 44729522 to 44729550 28 + TSS region transcription start site region 119535
Jarid2 13 44729535 to 44921643 192108 + protein coding gene jumonji, AT rich interactive domain 2
Tssr119536 13 44729600 to 44729614 14 + TSS region transcription start site region 119536
Tssr119537 13 44729639 to 44729697 58 + TSS region transcription start site region 119537
Tssr119538 13 44729794 to 44729807 13 + TSS region transcription start site region 119538
Tssr119539 13 44730594 to 44730598 4 + TSS region transcription start site region 119539
Tssr119540 13 44730726 to 44730816 90 + TSS region transcription start site region 119540
Tssr119541 13 44730881 to 44730907 26 + TSS region transcription start site region 119541
Tssr119542 13 44731019 to 44731036 17 + TSS region transcription start site region 119542
Tssr119543 13 44731265 to 44731276 11 + TSS region transcription start site region 119543
Tssr119544 13 44731281 to 44731292 11 + TSS region transcription start site region 119544
Tssr119545 13 44731325 to 44731341 16 + TSS region transcription start site region 119545
Tssr119546 13 44731353 to 44731373 20 + TSS region transcription start site region 119546
Tssr119547 13 44731568 to 44731583 15 + TSS region transcription start site region 119547
Tssr119548 13 44731724 to 44731738 14 + TSS region transcription start site region 119548
Tssr119549 13 44731842 to 44731861 19 + TSS region transcription start site region 119549
Cpgi5526 13 44733210 to 44734230 1020 CpG island CpG island 5526
Tssr119550 13 44734034 to 44734069 35 + TSS region transcription start site region 119550
Tssr119551 13 44736672 to 44736675 3 + TSS region transcription start site region 119551
Tssr119552 13 44741482 to 44741487 5 + TSS region transcription start site region 119552
Tssr119553 13 44742073 to 44742097 24 + TSS region transcription start site region 119553
Tssr119554 13 44749068 to 44749073 5 + TSS region transcription start site region 119554
D13Ertd787e 13 44757063 to 44757263 200 DNA segment DNA segment, Chr 13, ERATO Doi 787, expressed
Tssr119555 13 44757928 to 44757932 4 + TSS region transcription start site region 119555
Pgia40 13 44764993 to 44765084 91 QTL proteoglycan induced arthritis 40
D13Mit179 13 44764993 to 44765084 91 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 179
Tssr119556 13 44766620 to 44766623 3 + TSS region transcription start site region 119556
Tssr119557 13 44782400 to 44782430 30 + TSS region transcription start site region 119557
Tssr119558 13 44800783 to 44800788 5 + TSS region transcription start site region 119558
D13Ertd42e 13 44805995 to 44806231 236 DNA segment DNA segment, Chr 13, ERATO Doi 42, expressed
Tssr119559 13 44807756 to 44807768 12 + TSS region transcription start site region 119559
Tssr119560 13 44808626 to 44808633 7 + TSS region transcription start site region 119560
A930104B17Rik 13 44812344 to 44813922 1578 unclassified gene RIKEN cDNA A930104B17 gene
Tssr119561 13 44819954 to 44819971 17 + TSS region transcription start site region 119561
Tssr119562 13 44837081 to 44837091 10 + TSS region transcription start site region 119562
Gm22213 13 44838165 to 44838283 118 - snoRNA gene predicted gene, 22213
Tssr119563 13 44840686 to 44840697 11 + TSS region transcription start site region 119563
Tssr119564 13 44840708 to 44840727 19 + TSS region transcription start site region 119564
Tssr119565 13 44840737 to 44840752 15 + TSS region transcription start site region 119565
Tssr119566 13 44840757 to 44840795 38 + TSS region transcription start site region 119566
Tssr119567 13 44850946 to 44850952 6 + TSS region transcription start site region 119567
Cpgi5527 13 44869576 to 44870109 533 CpG island CpG island 5527
Tssr122286 13 44869608 to 44869623 15 - TSS region transcription start site region 122286
Tssr122287 13 44869660 to 44869671 11 - TSS region transcription start site region 122287
Tssr122288 13 44869687 to 44869714 27 - TSS region transcription start site region 122288
Tssr122289 13 44869718 to 44869729 11 - TSS region transcription start site region 122289
Tssr4058 13 44870071 to 44870101 30 - TSS region transcription start site region 4058
Tssr119568 13 44874354 to 44874377 23 + TSS region transcription start site region 119568
Tssr119569 13 44896423 to 44896440 17 + TSS region transcription start site region 119569
Dtnbp1 13 44922077 to 45002096 80019 - protein coding gene dystrobrevin binding protein 1
Tssr122290 13 44947131 to 44947157 26 - TSS region transcription start site region 122290
Tssr122291 13 44947164 to 44947188 24 - TSS region transcription start site region 122291
Tssr119570 13 44961547 to 44961550 3 + TSS region transcription start site region 119570
Tssr122292 13 44979213 to 44979219 6 - TSS region transcription start site region 122292
Tssr122293 13 44982793 to 44982802 9 - TSS region transcription start site region 122293
Tssr122294 13 44982813 to 44982842 29 - TSS region transcription start site region 122294
Tssr122295 13 44982847 to 44982858 11 - TSS region transcription start site region 122295
Tssr122296 13 44982974 to 44982979 5 - TSS region transcription start site region 122296
Tssr122297 13 44982989 to 44983004 15 - TSS region transcription start site region 122297
Cpgi5528 13 45001386 to 45002561 1175 CpG island CpG island 5528
Tssr122298 13 45001828 to 45001846 18 - TSS region transcription start site region 122298
Tssr122299 13 45002045 to 45002117 72 - TSS region transcription start site region 122299
Tssr122300 13 45002140 to 45002151 11 - TSS region transcription start site region 122300
Gm23104 13 45026252 to 45026355 103 - snRNA gene predicted gene, 23104
Pcd4ts2 13 45056966 to 45057068 102 QTL p-glycoprotein positive CD4 T cell subset 2
D13Mit64 13 45056966 to 45057068 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 64
Bxs7 13 45056966 to 83596627 38539661 QTL BXSB/MpJ autoimmune nephritis 7
Bxs6 13 45056966 to 83596627 38539661 QTL BXSB/MpJ autoimmune nephritis 6
Cpgi5529 13 45059283 to 45059443 160 CpG island CpG island 5529
D13Mit245 13 45063903 to 45064039 136 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 245
Vtbt15 13 45063903 to 45064039 136 QTL vertebral trabecular bone trait 15
Heal21 13 45063903 to 45064039 136 QTL wound healing/regeneration 21
Gm34409 13 45075493 to 45078269 2776 + lncRNA gene predicted gene, 34409
Hsp25-ps1 13 45078498 to 45079127 629 - pseudogene heat shock protein 25, pseudogene 1
Cpgi5530 13 45078559 to 45078773 214 CpG island CpG island 5530
Gm9817 13 45078692 to 45081222 2530 + protein coding gene predicted gene 9817
Tssr122301 13 45079183 to 45079191 8 - TSS region transcription start site region 122301
Gm40932 13 45106951 to 45117884 10933 + lincRNA gene predicted gene, 40932
D13Mit277 13 45140870 to 45140994 124 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 277
Gm8513 13 45186534 to 45187536 1002 - pseudogene predicted gene 8513
D13Mit267 13 45224654 to 45224747 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 267
Gm47448 13 45235635 to 45335588 99953 + lincRNA gene predicted gene, 47448
Gm34466 13 45246632 to 45267711 21079 - lincRNA gene predicted gene, 34466
Gm23755 13 45294654 to 45294996 342 - unclassified non-coding RNA gene predicted gene, 23755
D13Mit180 13 45331260 to 45331367 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 180
Gm40933 13 45359100 to 45371211 12111 + lncRNA gene predicted gene, 40933
Cpgi5531 13 45389392 to 45390570 1178 CpG island CpG island 5531
Tssr119571 13 45389734 to 45389750 16 + TSS region transcription start site region 119571
Mylip 13 45389742 to 45411940 22198 + protein coding gene myosin regulatory light chain interacting protein
Tssr119572 13 45391764 to 45391779 15 + TSS region transcription start site region 119572
Tssr119573 13 45391780 to 45391794 14 + TSS region transcription start site region 119573
Tssr119574 13 45403487 to 45403490 3 + TSS region transcription start site region 119574
Tssr119575 13 45410765 to 45410768 3 + TSS region transcription start site region 119575
Gm47455 13 45431002 to 45431331 329 + pseudogene predicted gene, 47455
Gm23387 13 45486224 to 45486330 106 - snRNA gene predicted gene, 23387
Cpgi5532 13 45507171 to 45508078 907 CpG island CpG island 5532
Tssr119576 13 45507438 to 45507515 77 + TSS region transcription start site region 119576
Gmpr 13 45507444 to 45546386 38942 + protein coding gene guanosine monophosphate reductase
Tssr119577 13 45507527 to 45507549 22 + TSS region transcription start site region 119577
Tssr119578 13 45507564 to 45507576 12 + TSS region transcription start site region 119578
Tssr119579 13 45507598 to 45507650 52 + TSS region transcription start site region 119579
Tssr119580 13 45516979 to 45517025 46 + TSS region transcription start site region 119580
Gm34582 13 45521186 to 45524440 3254 - lncRNA gene predicted gene, 34582
Tssr119581 13 45538806 to 45538839 33 + TSS region transcription start site region 119581